Miyakogusa Predicted Gene
- Lj0g3v0269239.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0269239.1 Non Chatacterized Hit- tr|K4CH48|K4CH48_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,55.91,2e-19,UBA-like,UBA-like;
UBA,Ubiquitin-associated/translation elongation factor EF1B,
N-terminal; SUBFAMIL,CUFF.17782.1
(381 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|CB829126 similar to UniRef100_A7P1D3 Cluster: Ubiquitin... 478 e-134
gnl|LJGI|TC67025 similar to UniRef100_A7P1D3 Cluster: Ubiquitin ... 323 4e-88
>gnl|LJGI|CB829126 similar to UniRef100_A7P1D3 Cluster: Ubiquitin carboxyl-terminal
hydrolase; n=1; Vitis vinifera|Rep: Ubiquitin
carboxyl-terminal hydrolase - Vitis vinifera (Grape),
partial (13%)
Length = 460
Score = 478 bits (241), Expect = e-134
Identities = 241/241 (100%)
Strand = Plus / Plus
Query: 1 atgaattggttactgtctcacatggatgatccagatattgacactcctatttttgaaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 atgaattggttactgtctcacatggatgatccagatattgacactcctatttttgaaagc 279
Query: 61 catggctctgaaactttgacaaatgttgaccaatcaaaagttgattctctaatttcattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 catggctctgaaactttgacaaatgttgaccaatcaaaagttgattctctaatttcattt 339
Query: 121 ggatttcaagaagagatttctagaaaggcactgaaggcatcgggtggtgacattgacaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ggatttcaagaagagatttctagaaaggcactgaaggcatcgggtggtgacattgacaaa 399
Query: 181 gcaacatattggatattgagcaatcctgatgcagtctccagtatggatgctacctcatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gcaacatattggatattgagcaatcctgatgcagtctccagtatggatgctacctcatca 459
Query: 241 a 241
|
Sbjct: 460 a 460
>gnl|LJGI|TC67025 similar to UniRef100_A7P1D3 Cluster: Ubiquitin carboxyl-terminal
hydrolase; n=1; Vitis vinifera|Rep: Ubiquitin
carboxyl-terminal hydrolase - Vitis vinifera (Grape),
partial (33%)
Length = 1148
Score = 323 bits (163), Expect = 4e-88
Identities = 282/320 (88%), Gaps = 10/320 (3%)
Strand = Plus / Plus
Query: 1 atgaattggttactgtctcacatggatgatccagatattgacactcctatttttgaaagc 60
|||||||||||||| |||||||||||||||||||||||||||| ||| ||| |||||
Sbjct: 422 atgaattggttactatctcacatggatgatccagatattgacaatccgattgccgaaagt 481
Query: 61 catggctctgaaactttgacaaatgttgaccaatcaaaagttgattctctaatttcattt 120
|| |||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 482 ------tcggaaactttgacaaatgttgaccaatcaaaagttgatactctaatttcgttt 535
Query: 121 ggatttcaagaagagatttctagaaaggcactgaaggcatcgggtggtgacattgacaaa 180
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 536 ggatttcaagaagagattgctagaaaggcactgaaggcatcgggtggtgatattgagaaa 595
Query: 181 gcaacatattggatattgagcaatcctgatg---cagtctccagtatggatgctacctca 237
|||||| |||||||||| | || |||||| | ||||||||||||||||||||||||||
Sbjct: 596 gcaacagattggatatttaccagtcctgacgcgtcagtctccagtatggatgctacctca 655
Query: 238 tcaaatgct-ccacaattcacaatgatgacagtctacctgatggaggagggagatatcaa 296
||| ||||| || ||| ||||||||||| |||||| |||||||||||||||| |||||
Sbjct: 656 tcagatgctacctcaactcacaatgatgtcagtctgcctgatggaggagggaaatatcgc 715
Query: 297 cttattggaattgttagcca 316
||||| ||| ||||||||||
Sbjct: 716 cttatgggagttgttagcca 735