Miyakogusa Predicted Gene
- Lj0g3v0268949.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0268949.1 tr|B9I2M0|B9I2M0_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_892121
PE=4,33.85,2e-18,STRUCTURAL CONSTITUENT OF RIBOSOME,NULL; 60S
RIBOSOMAL PROTEIN L34,Ribosomal protein L34Ae; seg,NULL,CUFF.17767.1
(1710 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC66004 similar to UniRef100_A7PMW3 Cluster: Chromosome... 1257 0.0
gnl|LJGI|TC81035 weakly similar to UniRef100_A7QED6 Cluster: Chr... 56 8e-07
>gnl|LJGI|TC66004 similar to UniRef100_A7PMW3 Cluster: Chromosome chr14 scaffold_21,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_21, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (30%)
Length = 763
Score = 1257 bits (634), Expect = 0.0
Identities = 640/642 (99%)
Strand = Plus / Plus
Query: 1069 atgagaaggttcaatgaagtagctggagagtttcaacagttccaagtgcttctacaaaga 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgagaaggttcaatgaagtagctggagagtttcaacagttccaagtgcttctacaaaga 60
Query: 1129 tttatggagaatgaacttttccagtgtccgagggttgaaaattatgctaggaatcgttgt 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttatggagaatgaacttttccagtgtccgagggttgaaaattatgctaggaatcgttgt 120
Query: 1189 gccatgaagaatcttcttcaagttccagtaataagagaagacaacgccaaggataaaaag 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gccatgaagaatcttcttcaagttccagtaataagagaagacaacgccaaggataaaaag 180
Query: 1249 aagtacagagaaagagaggctgataaggatgccatcacaagcggcatgctagtagaagtt 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aagtacagagaaagagaggctgataaggatgccatcacaagcggcatgctagtagaagtt 240
Query: 1309 ttggaagaatcaatcagaacaatttggcgttttataagagccgataaagatgcatctagc 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttggaagaatcaatcagaacaatttggcgttttataagagccgataaagatgcatctagc 300
Query: 1369 ttgaaaggtgcaagagaaaagcaagtagagctacaagacccttcagattctgaacttcta 1428
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 301 ttgaaaggtgcaagagaaaagcaagtagagctacaagacccttcagattttgaacttcta 360
Query: 1429 gtggagattcgaacagagcttgaaaagaaggaaaagagactgagagagcttctgaggagt 1488
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 361 gtggagattcgaacagagcttgaaaagaaggaaaagagactgagagagcttttgaggagt 420
Query: 1489 ggatgctgcatattgaagaagttccaaaagcaccatgaagatgggacggatcaagtgctt 1548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggatgctgcatattgaagaagttccaaaagcaccatgaagatgggacggatcaagtgctt 480
Query: 1549 tacttcttctctcaagtggatatgaaattggtttggagagtgttgaacatgtcaaggata 1608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tacttcttctctcaagtggatatgaaattggtttggagagtgttgaacatgtcaaggata 540
Query: 1609 acaacggatcaactagcatggtgtcgtagtaaattaaacaagatcaattttgtaaacaga 1668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 acaacggatcaactagcatggtgtcgtagtaaattaaacaagatcaattttgtaaacaga 600
Query: 1669 aggatacaagtagaaccatcattcttactttttcctagttag 1710
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aggatacaagtagaaccatcattcttactttttcctagttag 642
>gnl|LJGI|TC81035 weakly similar to UniRef100_A7QED6 Cluster: Chromosome chr1
scaffold_84, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr1 scaffold_84, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (31%)
Length = 1323
Score = 56.0 bits (28), Expect = 8e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1495 tgcatattgaagaagttccaaaagcaccatga 1526
|||||| |||||||||||||||||||||||||
Sbjct: 915 tgcatagtgaagaagttccaaaagcaccatga 946