Miyakogusa Predicted Gene

Lj0g3v0268419.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0268419.1 CUFF.17728.1
         (3378 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP085756 similar to UniRef100_A1Y1U0 Cluster: CMR1; n=1...   585   e-166
gnl|LJGI|DC593097 weakly similar to UniRef100_Q2HRG4 Cluster: Ri...    76   2e-12

>gnl|LJGI|BP085756 similar to UniRef100_A1Y1U0 Cluster: CMR1; n=1; Phaseolus
            vulgaris|Rep: CMR1 - Phaseolus vulgaris (Kidney bean)
            (French bean), partial (9%)
          Length = 452

 Score =  585 bits (295), Expect = e-166
 Identities = 295/295 (100%)
 Strand = Plus / Minus

                                                                        
Query: 3082 gtgggatttgcattgtgtttcctgttagttagttatgctgatccacctgaggtgtgccat 3141
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452  gtgggatttgcattgtgtttcctgttagttagttatgctgatccacctgaggtgtgccat 393

                                                                        
Query: 3142 catgaagtcgattgctacttgtttggacctgaaggtaagctatttatcagctccaggaac 3201
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392  catgaagtcgattgctacttgtttggacctgaaggtaagctatttatcagctccaggaac 333

                                                                        
Query: 3202 ttacctcctatgcagccatattaccctcacctttatattctctatttgtcaattgatgaa 3261
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332  ttacctcctatgcagccatattaccctcacctttatattctctatttgtcaattgatgaa 273

                                                                        
Query: 3262 tgcggtgatagattttatgaaggtggtgacttcagtgaaattgaatttgtattgaaatgt 3321
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272  tgcggtgatagattttatgaaggtggtgacttcagtgaaattgaatttgtattgaaatgt 213

                                                                   
Query: 3322 tattgctgtcattcattgagaatagtgaggtgtgggtgtcgtctggtaagtaagc 3376
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212  tattgctgtcattcattgagaatagtgaggtgtgggtgtcgtctggtaagtaagc 158


>gnl|LJGI|DC593097 weakly similar to UniRef100_Q2HRG4 Cluster: Ribonuclease H; n=1;
            Medicago truncatula|Rep: Ribonuclease H - Medicago
            truncatula (Barrel medic), partial (7%)
          Length = 494

 Score = 75.8 bits (38), Expect = 2e-12
 Identities = 107/130 (82%)
 Strand = Plus / Plus

                                                                        
Query: 903  caacaagaaggttcttcttgttcttgatgatgtaagtgaattaagccaattggaaaattt 962
            |||||| || ||||| |||||||||||||||||||||     || |||  | || |||||
Sbjct: 334  caacaaaaaagttctacttgttcttgatgatgtaagttctaaaatccaccttgagaattt 393

                                                                        
Query: 963  agctggaaagcaagaatggtttggtccaggaagcagagtaatcatcacaaccagagataa 1022
             |||||||| |||||||||||||||| ||| || ||| | ||| ||||||| || |||||
Sbjct: 394  ggctggaaaccaagaatggtttggtcaagggagtagaattatcgtcacaactagggataa 453

                      
Query: 1023 gcacctgcta 1032
            ||||||||||
Sbjct: 454  gcacctgcta 463