Miyakogusa Predicted Gene
- Lj0g3v0268209.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0268209.1 tr|B9H0C6|B9H0C6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_800704 PE=4
SV=1,76.69,0,NMD3,NMD3; SUBFAMILY NOT NAMED,NULL; NONSENSE-MEDIATED
MRNA DECAY PROTEIN 3,NULL; seg,NULL,CUFF.17706.1
(1126 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC76638 similar to UniRef100_A7PYY1 Cluster: Chromosome... 1090 0.0
gnl|LJGI|TC72609 similar to UniRef100_A7PYY1 Cluster: Chromosome... 264 1e-69
gnl|LJGI|TC58783 similar to UniRef100_A7PYY1 Cluster: Chromosome... 264 1e-69
gnl|LJGI|AV410246 similar to UniRef100_A7PYY1 Cluster: Chromosom... 240 2e-62
gnl|LJGI|TC57994 similar to UniRef100_A7PYY1 Cluster: Chromosome... 232 4e-60
>gnl|LJGI|TC76638 similar to UniRef100_A7PYY1 Cluster: Chromosome chr4 scaffold_39,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_39, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (64%)
Length = 1290
Score = 1090 bits (550), Expect = 0.0
Identities = 871/974 (89%), Gaps = 18/974 (1%)
Strand = Plus / Plus
Query: 118 aagcatggtgctgcggccagggctataaggataaaacagatgcatgagggcattgacttc 177
||||| |||||||| ||||| ||||||||||| ||||||||| |||||||||||||||||
Sbjct: 84 aagcacggtgctgctgccagtgctataaggatcaaacagatggatgagggcattgacttc 143
Query: 178 tttttctccaacaaaaaccatggtgaggagtttgtgaaatttttaaggaaagtagctcct 237
| |||||| || | || |||||||| |||||||| ||||| || ||||||||||||||
Sbjct: 144 tatttctctaatagaagccatggtgtcaagtttgtggaatttatagggaaagtagctcct 203
Query: 238 ataaggagcaatggtgataatatgcaacttgtttctcatgatacaaagagtaatgaatac 297
|||| |||| | | ||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 204 ataaagagccgtagagataa---gcagcttgtttctcatgatacaaagagtaatgaatac 260
Query: 298 aattacaagtttacattttctgttgaaatcagccccatttgccgtgaggatttaatctgt 357
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactacaaacatacattttctgttgaaatcagccccatttgccgtgaggatttaatctgt 320
Query: 358 ctgcctcataatgttgctctaagtttgggaaatcttggcccattggtaatttgcactaag 417
||||||| ||| |||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct: 321 ctgcctcctaaagttgctctaagtttgggaaatcttggcccaattgtgatttgcactaag 380
Query: 418 gttaccaacaacattgttctgcttgatccatttaccttgaggcactgtttcttagatgct 477
|||||||||| ||||| | ||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 381 gttaccaacagcattgctttgcttgatccattcaccttgaggtactgtttcttagatgct 440
Query: 478 gataagtattggagg---gccttcaagtctttacttactagtagacagttagtggagtat 534
||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 gatcagtattggaggtcatccttcaagtctttacttactagcagacagttagtggagtat 500
Query: 535 gttgtgctgaatgtggaggaggttgtgccatctgaggtggttactgttggcggcacaaaa 594
| || ||| |||| |||||||||| ||||||| |||||||||||| ||||| |||
Sbjct: 501 atagtcctggatgt---ggaggttgtgtcatctga---ggttactgttggtggcacgaaa 554
Query: 595 tatgttttagctcttgctgaagtggctcgtgtgtccgatttcggaaagaatgatacaaga 654
|||||||||||| ||| |||||||||||||||| ||||| ||||||||||| |||| |
Sbjct: 555 tatgttttagctgatgcccaagtggctcgtgtgtcagattttggaaagaatgacacaata 614
Query: 655 ttttccattaggactcatcttggtcatcttttaaatcctggggattatgctcttggttat 714
|||||||| | |||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 615 ttttccatcaagactcatcttggccatcttttaaatcctggtgattatgctcttggttat 674
Query: 715 gacctacatggggctaattgtaatgacattgaattggacaaattcaaaggac---ccctt 771
|||||| ||||||||||| ||| ||||||||||||||||||| |||||||| ||||
Sbjct: 675 gacctatatggggctaataataacgacattgaattggacaaatacaaaggacttatcctt 734
Query: 772 cctgaagcaattttagtaaagaagagttatgaagagaagcgcctgaagcaacgtgggaag 831
||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 735 cctgatgcaattttagtaaagaagagttatgaagagaagcgccagaagaaacgtgggaag 794
Query: 832 cctcgttcatggaagcttaaatcactcaacatggaggttgatgataa---gggtagaact 888
|||||||||||||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct: 795 gctcgttcatggaagcttaaatcactcaacatggaggttgatgataaggtggctagagct 854
Query: 889 gacccagacaagatgaactcagaatatgaacaattcttaaaagatttggaagaaaaccct 948
||||||||||||||| |||||||||| |||||||||||||| ||| |||||||||||||
Sbjct: 855 gacccagacaagatgcactcagaatacgaacaattcttaaaggatctggaagaaaacccc 914
Query: 949 gacctgaggttcaacatatcattgtacgaaaataaagagtaccagccatcagatatggca 1008
||||||||||||||||||||| ||||| |||||||||||||||||||||||| || |||
Sbjct: 915 gacctgaggttcaacatatcactgtaccgaaataaagagtaccagccatcagagatagca 974
Query: 1009 tctgtgactgatggggaagagctaccttctgttccactggaggagttactggctgatttt 1068
|| |||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| ||
Sbjct: 975 tcagtgactgatggggaagagcttccttctgttcccctggaggagctactggctgatctt 1034
Query: 1069 gagctgggtgagga 1082
||||||||||||||
Sbjct: 1035 gagctgggtgagga 1048
>gnl|LJGI|TC72609 similar to UniRef100_A7PYY1 Cluster: Chromosome chr4 scaffold_39,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_39, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (12%)
Length = 963
Score = 264 bits (133), Expect = 1e-69
Identities = 160/169 (94%)
Strand = Plus / Minus
Query: 914 atgaacaattcttaaaagatttggaagaaaaccctgacctgaggttcaacatatcattgt 973
|||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct: 882 atgaacaattcttaaatgatctggaagaaaaccctgacctgaggttcaacctatcactgt 823
Query: 974 acgaaaataaagagtaccagccatcagatatggcatctgtgactgatggggaagagctac 1033
|| |||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 822 accaaaatatagagttccagccatcagagatggcatctgtgactgatggggaagagctac 763
Query: 1034 cttctgttccactggaggagttactggctgattttgagctgggtgagga 1082
|||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 762 cttctgttccactggaggagttactggctgatcttgagctgggtgagga 714
>gnl|LJGI|TC58783 similar to UniRef100_A7PYY1 Cluster: Chromosome chr4 scaffold_39,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_39, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (12%)
Length = 790
Score = 264 bits (133), Expect = 1e-69
Identities = 160/169 (94%)
Strand = Plus / Plus
Query: 914 atgaacaattcttaaaagatttggaagaaaaccctgacctgaggttcaacatatcattgt 973
|||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct: 57 atgaacaattcttaaatgatctggaagaaaaccctgacctgaggttcaacctatcactgt 116
Query: 974 acgaaaataaagagtaccagccatcagatatggcatctgtgactgatggggaagagctac 1033
|| |||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 117 accaaaatatagagttccagccatcagagatggcatctgtgactgatggggaagagctac 176
Query: 1034 cttctgttccactggaggagttactggctgattttgagctgggtgagga 1082
|||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 177 cttctgttccactggaggagttactggctgatcttgagctgggtgagga 225
>gnl|LJGI|AV410246 similar to UniRef100_A7PYY1 Cluster: Chromosome chr4 scaffold_39,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_39, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (11%)
Length = 426
Score = 240 bits (121), Expect = 2e-62
Identities = 148/157 (94%)
Strand = Plus / Plus
Query: 926 taaaagatttggaagaaaaccctgacctgaggttcaacatatcattgtacgaaaataaag 985
|||| ||| ||||||||||||||||||||||||||||| ||||| ||||| |||||| ||
Sbjct: 1 taaatgatctggaagaaaaccctgacctgaggttcaacctatcactgtaccaaaatatag 60
Query: 986 agtaccagccatcagatatggcatctgtgactgatggggaagagctaccttctgttccac 1045
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agttccagccatcagagatggcatctgtgactgatggggaagagctaccttctgttccac 120
Query: 1046 tggaggagttactggctgattttgagctgggtgagga 1082
|||||||||||||||||||| ||||||||||||||||
Sbjct: 121 tggaggagttactggctgatcttgagctgggtgagga 157
>gnl|LJGI|TC57994 similar to UniRef100_A7PYY1 Cluster: Chromosome chr4 scaffold_39,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_39, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (41%)
Length = 841
Score = 232 bits (117), Expect = 4e-60
Identities = 195/221 (88%)
Strand = Plus / Plus
Query: 21 ggtggcggctaatcctgatcagtggattgctgctgtgcaacttaggcaacacgtttcgca 80
|||||||||||| || ||||||||| |||| ||||||||||| |||||||| ||||| ||
Sbjct: 621 ggtggcggctaacccggatcagtgggttgcggctgtgcaactcaggcaacatgtttctca 680
Query: 81 tcgccgaaccttcttttatttggagcagctgattctcaagcatggtgctgcggccagggc 140
| | |||||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||
Sbjct: 681 taggcgaaccttcttttatttggagcagctgattctgaagcacggtgctgctgccagtgc 740
Query: 141 tataaggataaaacagatgcatgagggcattgacttctttttctccaacaaaaaccatgg 200
||||||||| ||||||||| |||||||||||||||||| |||||| || | || ||||||
Sbjct: 741 tataaggatcaaacagatggatgagggcattgacttctatttctctaatagaagccatgg 800
Query: 201 tgaggagtttgtgaaatttttaaggaaagtagctcctataa 241
|| |||||||| ||||| || ||||||||||||||||||
Sbjct: 801 tgtcaagtttgtggaatttatagggaaagtagctcctataa 841