Miyakogusa Predicted Gene

Lj0g3v0266349.3
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0266349.3 Non Chatacterized Hit- tr|D8UGY1|D8UGY1_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,48.94,0.0003,alpha/beta knot,NULL; SUBFAMILY NOT NAMED,NULL; RNA
METHYLTRANSFERASE,NULL; seg,NULL; SpoU_methylase,CUFF.17563.3
         (564 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC64727 similar to UniRef100_A7R0V1 Cluster: Chromosome...   341   3e-93
gnl|LJGI|TC74163 similar to UniRef100_A7R0V1 Cluster: Chromosome...   161   6e-39

>gnl|LJGI|TC64727 similar to UniRef100_A7R0V1 Cluster: Chromosome undetermined
           scaffold_324, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_324,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (31%)
          Length = 673

 Score =  341 bits (172), Expect = 3e-93
 Identities = 172/172 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggttggttacgtctactgcttctattgtacattgttttcaatttagatggcgatcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atgggttggttacgtctactgcttctattgtacattgttttcaatttagatggcgatcaa 436

                                                                       
Query: 61  aacaactgctacaagtggtttccatctgcacatcggatcttagtgcttgatgggattcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aacaactgctacaagtggtttccatctgcacatcggatcttagtgcttgatgggattcag 496

                                                               
Query: 121 gatcctggtaaccttggtacattgctcagatcagctgtggcctttagatggg 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gatcctggtaaccttggtacattgctcagatcagctgtggcctttagatggg 548


>gnl|LJGI|TC74163 similar to UniRef100_A7R0V1 Cluster: Chromosome undetermined
           scaffold_324, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_324,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (35%)
          Length = 578

 Score =  161 bits (81), Expect = 6e-39
 Identities = 81/81 (100%)
 Strand = Plus / Plus

                                                                       
Query: 36  tgttttcaatttagatggcgatcaaaacaactgctacaagtggtttccatctgcacatcg 95
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tgttttcaatttagatggcgatcaaaacaactgctacaagtggtttccatctgcacatcg 557

                                
Query: 96  gatcttagtgcttgatgggat 116
           |||||||||||||||||||||
Sbjct: 558 gatcttagtgcttgatgggat 578



 Score = 69.9 bits (35), Expect = 2e-11
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                              
Query: 1   atgggttggttacgtctactgcttctattgtacat 35
           |||||||||||||||||||||||||||||||||||
Sbjct: 377 atgggttggttacgtctactgcttctattgtacat 411