Miyakogusa Predicted Gene
- Lj0g3v0266149.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0266149.1 Non Chatacterized Hit- tr|B8A712|B8A712_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,54.39,2e-19,Ubiquitin homologues,Ubiquitin; Ubiquitin-like,NULL;
PREDICTED: SIMILAR TO UBIQUITIN,NULL; UBIQUITIN,CUFF.17547.1
(405 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC80873 similar to UniRef100_A7QCJ8 Cluster: Chromosome... 541 e-153
gnl|LJGI|TC58423 similar to UniRef100_A7QCJ8 Cluster: Chromosome... 222 1e-57
gnl|LJGI|TC58018 similar to UniRef100_A7QCJ8 Cluster: Chromosome... 222 1e-57
>gnl|LJGI|TC80873 similar to UniRef100_A7QCJ8 Cluster: Chromosome chr12 scaffold_78,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_78, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (33%)
Length = 1115
Score = 541 bits (273), Expect = e-153
Identities = 312/331 (94%)
Strand = Plus / Plus
Query: 75 ggaggaggagatgccactcaaggtcaaatggagcggcaaggattacacggtgcgagtctg 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ggaggaggagatgccactcaaggtcaaatggagcggcaaggattacacggtgcgagtctg 659
Query: 135 cggcgacgacaccattgtcgaactcaagcgtcgaatctgcgagttaaccaacgttttacc 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 cggcgacgacaccattgtcgaactcaagcgtcgaatctgcgagttaaccaacgttttacc 719
Query: 195 cattcgccagaagttcttataccctaaactcggttccaagctcaacgaccannnnnnnnn 254
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 cattcgccagaagttcttataccctaaactcggttccaagctcaacgaccactctctcaa 779
Query: 255 nnnnnnnnnaattcctaagttcaccatgatcgggactaatgaagaagattttttaattgt 314
||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 780 ctctctctcaattcctaagttcaccatgatcgggactactgaagaagattttttaattgt 839
Query: 315 tgatccagtggaggcccctgagattattgatgatcttgagcttcctcaagaagaagctat 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 tgatccagtggaggcccctgagattattgatgatcttgagcttcctcaagaagaagctat 899
Query: 375 tgacatcaaagacatggaggtcaacaagcac 405
|||||||||||||||||||||||||||||||
Sbjct: 900 tgacatcaaagacatggaggtcaacaagcac 930
Score = 147 bits (74), Expect = 6e-35
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 1 atggagcggcaaggattacacggtgcgagtctgcggcgacgacaccattgtcgaactcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 atggagcggcaaggattacacggtgcgagtctgcggcgacgacaccattgtcgaactcaa 686
Query: 61 gcgtcgaatctgcg 74
||||||||||||||
Sbjct: 687 gcgtcgaatctgcg 700
>gnl|LJGI|TC58423 similar to UniRef100_A7QCJ8 Cluster: Chromosome chr12 scaffold_78,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_78, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (98%)
Length = 1561
Score = 222 bits (112), Expect = 1e-57
Identities = 154/168 (91%)
Strand = Plus / Plus
Query: 75 ggaggaggagatgccactcaaggtcaaatggagcggcaaggattacacggtgcgagtctg 134
||||||||||||| ||||||||||||||||| ||||||||||||||| || ||||||||
Sbjct: 132 ggaggaggagatgacactcaaggtcaaatgggccggcaaggattacaccgtccgagtctg 191
Query: 135 cggcgacgacaccattgtcgaactcaagcgtcgaatctgcgagttaaccaacgttttacc 194
||||||||||||| | | ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 192 cggcgacgacaccgtcggcgaactcaagcgtcgaatctgcgagctaaccaacgttttacc 251
Query: 195 cattcgccagaagttcttataccctaaactcggttccaagctcaacga 242
||||||||||||| || | ||||||||||||||||| || ||||||||
Sbjct: 252 cattcgccagaagctcctgtaccctaaactcggttctaaactcaacga 299
Score = 200 bits (101), Expect = 5e-51
Identities = 127/135 (94%), Gaps = 3/135 (2%)
Strand = Plus / Plus
Query: 271 aagttcaccatgatcgggactaatgaagaagattttttaattgttgatccagtggaggcc 330
|||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||
Sbjct: 343 aagttcaccatgatcgggactactgaagaagatttg---attgtggatccagtggaggct 399
Query: 331 cctgagattattgatgatcttgagcttcctcaagaagaagctattgacatcaaagacatg 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 cctgagattattgatgatcttgagcttcctcaagaagaagctattgacatcaaagacatg 459
Query: 391 gaggtcaacaagcac 405
|| ||||||||||||
Sbjct: 460 gaagtcaacaagcac 474
Score = 95.6 bits (48), Expect = 2e-19
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 7 cggcaaggattacacggtgcgagtctgcggcgacgacaccattgtcgaactcaagcgtcg 66
||||||||||||||| || ||||||||||||||||||||| | | |||||||||||||||
Sbjct: 165 cggcaaggattacaccgtccgagtctgcggcgacgacaccgtcggcgaactcaagcgtcg 224
Query: 67 aatctgcg 74
||||||||
Sbjct: 225 aatctgcg 232
>gnl|LJGI|TC58018 similar to UniRef100_A7QCJ8 Cluster: Chromosome chr12 scaffold_78,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_78, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (69%)
Length = 828
Score = 222 bits (112), Expect = 1e-57
Identities = 154/168 (91%)
Strand = Plus / Plus
Query: 75 ggaggaggagatgccactcaaggtcaaatggagcggcaaggattacacggtgcgagtctg 134
||||||||||||| ||||||||||||||||| ||||||||||||||| || ||||||||
Sbjct: 157 ggaggaggagatgacactcaaggtcaaatgggccggcaaggattacaccgtccgagtctg 216
Query: 135 cggcgacgacaccattgtcgaactcaagcgtcgaatctgcgagttaaccaacgttttacc 194
||||||||||||| | | ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 217 cggcgacgacaccgtcggcgaactcaagcgtcgaatctgcgagctaaccaacgttttacc 276
Query: 195 cattcgccagaagttcttataccctaaactcggttccaagctcaacga 242
||||||||||||| || | ||||||||||||||||| || ||||||||
Sbjct: 277 cattcgccagaagctcctgtaccctaaactcggttctaaactcaacga 324
Score = 200 bits (101), Expect = 5e-51
Identities = 127/135 (94%), Gaps = 3/135 (2%)
Strand = Plus / Plus
Query: 271 aagttcaccatgatcgggactaatgaagaagattttttaattgttgatccagtggaggcc 330
|||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||
Sbjct: 368 aagttcaccatgatcgggactactgaagaagatttg---attgtggatccagtggaggct 424
Query: 331 cctgagattattgatgatcttgagcttcctcaagaagaagctattgacatcaaagacatg 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cctgagattattgatgatcttgagcttcctcaagaagaagctattgacatcaaagacatg 484
Query: 391 gaggtcaacaagcac 405
|| ||||||||||||
Sbjct: 485 gaagtcaacaagcac 499
Score = 95.6 bits (48), Expect = 2e-19
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 7 cggcaaggattacacggtgcgagtctgcggcgacgacaccattgtcgaactcaagcgtcg 66
||||||||||||||| || ||||||||||||||||||||| | | |||||||||||||||
Sbjct: 190 cggcaaggattacaccgtccgagtctgcggcgacgacaccgtcggcgaactcaagcgtcg 249
Query: 67 aatctgcg 74
||||||||
Sbjct: 250 aatctgcg 257