Miyakogusa Predicted Gene
- Lj0g3v0265589.3
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0265589.3 Non Chatacterized Hit- tr|F6GUK3|F6GUK3_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,74.68,2e-19,RRM_1,RNA recognition motif domain; no
description,Nucleotide-binding, alpha-beta plait;
SERINE/ARGI,CUFF.17519.3
(234 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS340611 similar to UniRef100_A7P058 Cluster: Chromosom... 464 e-130
gnl|LJGI|TC58215 similar to UniRef100_A7P058 Cluster: Chromosome... 464 e-130
gnl|LJGI|TC61975 similar to UniRef100_A7P058 Cluster: Chromosome... 458 e-129
gnl|LJGI|TC60161 similar to UniRef100_A7P058 Cluster: Chromosome... 456 e-128
gnl|LJGI|TC62957 similar to UniRef100_Q10KQ7 Cluster: RNA recogn... 452 e-127
gnl|LJGI|TC58343 similar to UniRef100_Q9SEU4 Cluster: Serine/arg... 295 6e-80
>gnl|LJGI|FS340611 similar to UniRef100_A7P058 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (23%)
Length = 836
Score = 464 bits (234), Expect = e-130
Identities = 234/234 (100%)
Strand = Plus / Plus
Query: 1 atgagggggagaagctacagttacagtccctcacctccaaggcgttacggcggccgaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 atgagggggagaagctacagttacagtccctcacctccaaggcgttacggcggccgaaga 233
Query: 61 aggcgcagtcctagccctaagggccgctaccgtggaagggaaagggatttgcctactagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 aggcgcagtcctagccctaagggccgctaccgtggaagggaaagggatttgcctactagt 293
Query: 121 cttctggttcggaacctgcacagagataccaggacagaagatctgcatggtccctttagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 cttctggttcggaacctgcacagagataccaggacagaagatctgcatggtccctttagc 353
Query: 181 cactttggtcctatcaaagatgtttatctgcctcgcgattattatactgggtga 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cactttggtcctatcaaagatgtttatctgcctcgcgattattatactgggtga 407
>gnl|LJGI|TC58215 similar to UniRef100_A7P058 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (27%)
Length = 1040
Score = 464 bits (234), Expect = e-130
Identities = 234/234 (100%)
Strand = Plus / Plus
Query: 1 atgagggggagaagctacagttacagtccctcacctccaaggcgttacggcggccgaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 atgagggggagaagctacagttacagtccctcacctccaaggcgttacggcggccgaaga 142
Query: 61 aggcgcagtcctagccctaagggccgctaccgtggaagggaaagggatttgcctactagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 aggcgcagtcctagccctaagggccgctaccgtggaagggaaagggatttgcctactagt 202
Query: 121 cttctggttcggaacctgcacagagataccaggacagaagatctgcatggtccctttagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cttctggttcggaacctgcacagagataccaggacagaagatctgcatggtccctttagc 262
Query: 181 cactttggtcctatcaaagatgtttatctgcctcgcgattattatactgggtga 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cactttggtcctatcaaagatgtttatctgcctcgcgattattatactgggtga 316
>gnl|LJGI|TC61975 similar to UniRef100_A7P058 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (53%)
Length = 1043
Score = 458 bits (231), Expect = e-129
Identities = 231/231 (100%)
Strand = Plus / Plus
Query: 1 atgagggggagaagctacagttacagtccctcacctccaaggcgttacggcggccgaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 atgagggggagaagctacagttacagtccctcacctccaaggcgttacggcggccgaaga 222
Query: 61 aggcgcagtcctagccctaagggccgctaccgtggaagggaaagggatttgcctactagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 aggcgcagtcctagccctaagggccgctaccgtggaagggaaagggatttgcctactagt 282
Query: 121 cttctggttcggaacctgcacagagataccaggacagaagatctgcatggtccctttagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 cttctggttcggaacctgcacagagataccaggacagaagatctgcatggtccctttagc 342
Query: 181 cactttggtcctatcaaagatgtttatctgcctcgcgattattatactggg 231
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cactttggtcctatcaaagatgtttatctgcctcgcgattattatactggg 393
>gnl|LJGI|TC60161 similar to UniRef100_A7P058 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (27%)
Length = 729
Score = 456 bits (230), Expect = e-128
Identities = 230/230 (100%)
Strand = Plus / Plus
Query: 1 atgagggggagaagctacagttacagtccctcacctccaaggcgttacggcggccgaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 atgagggggagaagctacagttacagtccctcacctccaaggcgttacggcggccgaaga 138
Query: 61 aggcgcagtcctagccctaagggccgctaccgtggaagggaaagggatttgcctactagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 aggcgcagtcctagccctaagggccgctaccgtggaagggaaagggatttgcctactagt 198
Query: 121 cttctggttcggaacctgcacagagataccaggacagaagatctgcatggtccctttagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 cttctggttcggaacctgcacagagataccaggacagaagatctgcatggtccctttagc 258
Query: 181 cactttggtcctatcaaagatgtttatctgcctcgcgattattatactgg 230
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cactttggtcctatcaaagatgtttatctgcctcgcgattattatactgg 308
>gnl|LJGI|TC62957 similar to UniRef100_Q10KQ7 Cluster: RNA recognition motif family
protein, expressed; n=1; Oryza sativa Japonica
Group|Rep: RNA recognition motif family protein,
expressed - Oryza sativa subsp. japonica (Rice), partial
(66%)
Length = 1273
Score = 452 bits (228), Expect = e-127
Identities = 228/228 (100%)
Strand = Plus / Plus
Query: 1 atgagggggagaagctacagttacagtccctcacctccaaggcgttacggcggccgaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 atgagggggagaagctacagttacagtccctcacctccaaggcgttacggcggccgaaga 118
Query: 61 aggcgcagtcctagccctaagggccgctaccgtggaagggaaagggatttgcctactagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 aggcgcagtcctagccctaagggccgctaccgtggaagggaaagggatttgcctactagt 178
Query: 121 cttctggttcggaacctgcacagagataccaggacagaagatctgcatggtccctttagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 cttctggttcggaacctgcacagagataccaggacagaagatctgcatggtccctttagc 238
Query: 181 cactttggtcctatcaaagatgtttatctgcctcgcgattattatact 228
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 cactttggtcctatcaaagatgtttatctgcctcgcgattattatact 286
>gnl|LJGI|TC58343 similar to UniRef100_Q9SEU4 Cluster: Serine/arginine-rich protein;
n=1; Arabidopsis thaliana|Rep: Serine/arginine-rich
protein - Arabidopsis thaliana (Mouse-ear cress),
partial (23%)
Length = 813
Score = 295 bits (149), Expect = 6e-80
Identities = 152/153 (99%)
Strand = Plus / Plus
Query: 1 atgagggggagaagctacagttacagtccctcacctccaaggcgttacggcggccgaaga 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 atgagggggagaagctacaattacagtccctcacctccaaggcgttacggcggccgaaga 416
Query: 61 aggcgcagtcctagccctaagggccgctaccgtggaagggaaagggatttgcctactagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aggcgcagtcctagccctaagggccgctaccgtggaagggaaagggatttgcctactagt 476
Query: 121 cttctggttcggaacctgcacagagataccagg 153
|||||||||||||||||||||||||||||||||
Sbjct: 477 cttctggttcggaacctgcacagagataccagg 509
Score = 168 bits (85), Expect = 9e-42
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 150 caggacagaagatctgcatggtccctttagccactttggtcctatcaaagatgtttatct 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 caggacagaagatctgcatggtccctttagccactttggtcctatcaaagatgtttatct 707
Query: 210 gcctcgcgattattatactgggtga 234
|||||||||||||||||||||||||
Sbjct: 708 gcctcgcgattattatactgggtga 732