Miyakogusa Predicted Gene

Lj0g3v0265509.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0265509.1 CUFF.17527.1
         (328 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC61536 similar to UniRef100_Q6IT13 Cluster: Type three...   642   0.0  

>gnl|LJGI|TC61536 similar to UniRef100_Q6IT13 Cluster: Type three secretion apparatus
           protein T; n=1; Edwardsiella ictaluri|Rep: Type three
           secretion apparatus protein T - Edwardsiella ictaluri,
           partial (8%)
          Length = 702

 Score =  642 bits (324), Expect = 0.0
 Identities = 327/328 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggagccggccctaattttacagagacctctctcaccttcatctcttgcaacaatggat 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 42  atggagccggccctaattttacagagagctctctcaccttcatctcttgcaacaatggat 101

                                                                       
Query: 61  ctggcacccaccatgcatctccctcacctagccctcgccgccgcccttcatccatggccg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 ctggcacccaccatgcatctccctcacctagccctcgccgccgcccttcatccatggccg 161

                                                                       
Query: 121 ccgccgccacgattaccttttccttttccggccccatccgcgaatcgacctccatctcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 ccgccgccacgattaccttttccttttccggccccatccgcgaatcgacctccatctcct 221

                                                                       
Query: 181 tcttccattaaatcgcgcggcgccaccatctccttcgaactccaccgtaccgccagatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 tcttccattaaatcgcgcggcgccaccatctccttcgaactccaccgtaccgccagatct 281

                                                                       
Query: 241 gggtatgagtttcagaggttcagatcgaaccagatcttattttttctcacagttcaaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gggtatgagtttcagaggttcagatcgaaccagatcttattttttctcacagttcaaaaa 341

                                       
Query: 301 cccctagatcccacagtgatttcataga 328
           ||||||||||||||||||||||||||||
Sbjct: 342 cccctagatcccacagtgatttcataga 369