Miyakogusa Predicted Gene
- Lj0g3v0263999.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0263999.1 CUFF.17400.1
(335 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|GO040366 weakly similar to UniRef100_Q6ZC61 Cluster: Ri... 242 1e-63
gnl|LJGI|TC76668 similar to UniRef100_A7PX82 Cluster: Chromosome... 242 1e-63
gnl|LJGI|TC64240 weakly similar to UniRef100_Q6ZC61 Cluster: Rib... 242 1e-63
gnl|LJGI|TC64209 weakly similar to UniRef100_Q6ZC61 Cluster: Rib... 242 1e-63
>gnl|LJGI|GO040366 weakly similar to UniRef100_Q6ZC61 Cluster: Ribosomal protein L30p
family-like; n=1; Oryza sativa Japonica Group|Rep:
Ribosomal protein L30p family-like - Oryza sativa subsp.
japonica (Rice), partial (84%)
Length = 910
Score = 242 bits (122), Expect = 1e-63
Identities = 176/194 (90%)
Strand = Plus / Minus
Query: 1 atgagtgcattcaaagcttacaaggcttgtgcccccattgcttggagccctaatctctat 60
|||| |||||| || || ||||| || |||| ||| |||||||||||||| |||||||||
Sbjct: 478 atgaatgcatttaaggcatacaaagcatgtgtcccaattgcttggagcccaaatctctat 419
Query: 61 ataactctggtgaggggcattccggggacaaggaggctccataggcgtactttggaagca 120
||||||||||||||||||||||| ||||| ||||||||||| || || ||||||||||||
Sbjct: 418 ataactctggtgaggggcattccagggaccaggaggctccacagacgcactttggaagca 359
Query: 121 ctacgcctgggcaaatgcaatcgaactgtaatgcgatggaacacacctactgttagggga 180
||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 358 ctacgcctgggaaaatgcaatcgaactgtcatgcgatggaacacgcctactgttagggga 299
Query: 181 atgcttcaacaggt 194
||||| ||||||||
Sbjct: 298 atgctccaacaggt 285
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 251 gcccgcaaacagaaggacgaagcccaccgagc 282
||||||||||||||||| ||||||||||||||
Sbjct: 244 gcccgcaaacagaaggaggaagcccaccgagc 213
>gnl|LJGI|TC76668 similar to UniRef100_A7PX82 Cluster: Chromosome chr12 scaffold_36,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_36, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (20%)
Length = 1469
Score = 242 bits (122), Expect = 1e-63
Identities = 176/194 (90%)
Strand = Plus / Minus
Query: 1 atgagtgcattcaaagcttacaaggcttgtgcccccattgcttggagccctaatctctat 60
|||| ||||||||| || ||| | || |||| ||| |||||||||||||| |||||||||
Sbjct: 1384 atgaatgcattcaaggcataccaagcatgtgtcccaattgcttggagcccaaatctctat 1325
Query: 61 ataactctggtgaggggcattccggggacaaggaggctccataggcgtactttggaagca 120
||||||||||||||||||||||| ||||| ||||||||||| || || ||||||||||||
Sbjct: 1324 ataactctggtgaggggcattccagggaccaggaggctccacagacgcactttggaagca 1265
Query: 121 ctacgcctgggcaaatgcaatcgaactgtaatgcgatggaacacacctactgttagggga 180
||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 1264 ctacgcctgggaaaatgcaatcgaactgtcatgcgatggaacacgcctactgttagggga 1205
Query: 181 atgcttcaacaggt 194
||||| ||||||||
Sbjct: 1204 atgctccaacaggt 1191
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 251 gcccgcaaacagaaggacgaagcccaccgagc 282
||||||||||||||||| ||||||||||||||
Sbjct: 1150 gcccgcaaacagaaggaggaagcccaccgagc 1119
>gnl|LJGI|TC64240 weakly similar to UniRef100_Q6ZC61 Cluster: Ribosomal protein L30p
family-like; n=1; Oryza sativa Japonica Group|Rep:
Ribosomal protein L30p family-like - Oryza sativa subsp.
japonica (Rice), partial (84%)
Length = 1041
Score = 242 bits (122), Expect = 1e-63
Identities = 176/194 (90%)
Strand = Plus / Plus
Query: 1 atgagtgcattcaaagcttacaaggcttgtgcccccattgcttggagccctaatctctat 60
|||| ||||||||| || ||| | || |||| ||| |||||||||||||| |||||||||
Sbjct: 462 atgaatgcattcaaggcataccaagcatgtgtcccaattgcttggagcccaaatctctat 521
Query: 61 ataactctggtgaggggcattccggggacaaggaggctccataggcgtactttggaagca 120
||||||||||||||||||||||| ||||| ||||||||||| || || ||||||||||||
Sbjct: 522 ataactctggtgaggggcattccagggaccaggaggctccacagacgcactttggaagca 581
Query: 121 ctacgcctgggcaaatgcaatcgaactgtaatgcgatggaacacacctactgttagggga 180
||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 582 ctacgcctgggaaaatgcaatcgaactgtcatgcgatggaacacgcctactgttagggga 641
Query: 181 atgcttcaacaggt 194
||||| ||||||||
Sbjct: 642 atgctccaacaggt 655
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 251 gcccgcaaacagaaggacgaagcccaccgagc 282
||||||||||||||||| ||||||||||||||
Sbjct: 696 gcccgcaaacagaaggaggaagcccaccgagc 727
>gnl|LJGI|TC64209 weakly similar to UniRef100_Q6ZC61 Cluster: Ribosomal protein L30p
family-like; n=1; Oryza sativa Japonica Group|Rep:
Ribosomal protein L30p family-like - Oryza sativa subsp.
japonica (Rice), partial (84%)
Length = 684
Score = 242 bits (122), Expect = 1e-63
Identities = 176/194 (90%)
Strand = Plus / Plus
Query: 1 atgagtgcattcaaagcttacaaggcttgtgcccccattgcttggagccctaatctctat 60
|||| |||||| || || ||||| || |||| ||| |||||||||||||| |||||||||
Sbjct: 82 atgaatgcatttaaggcatacaaagcatgtgtcccaattgcttggagcccaaatctctat 141
Query: 61 ataactctggtgaggggcattccggggacaaggaggctccataggcgtactttggaagca 120
||||||||||||||||||||||| ||||| ||||||||||| || || ||||||||||||
Sbjct: 142 ataactctggtgaggggcattccagggaccaggaggctccacagacgcactttggaagca 201
Query: 121 ctacgcctgggcaaatgcaatcgaactgtaatgcgatggaacacacctactgttagggga 180
||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 202 ctacgcctgggaaaatgcaatcgaactgtcatgcgatggaacacgcctactgttagggga 261
Query: 181 atgcttcaacaggt 194
||||| ||||||||
Sbjct: 262 atgctccaacaggt 275
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 251 gcccgcaaacagaaggacgaagcccaccgagc 282
||||||||||||||||| ||||||||||||||
Sbjct: 316 gcccgcaaacagaaggaggaagcccaccgagc 347