Miyakogusa Predicted Gene
- Lj0g3v0262109.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0262109.1 tr|Q9FGE6|Q9FGE6_ARATH CTC-interacting domain 13
protein OS=Arabidopsis thaliana GN=CID13 PE=4
SV=1,46.67,0.000000004,RNA-binding domain, RBD,NULL; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; RRM,RNA recognition m,CUFF.17275.1
(381 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC81719 similar to UniRef100_Q0WQ17 Cluster: RNA-bindin... 285 1e-76
gnl|LJGI|TC61411 similar to UniRef100_A7QEW4 Cluster: Chromosome... 278 2e-74
gnl|LJGI|TC81539 similar to UniRef100_Q94JR0 Cluster: At1g32790;... 125 2e-28
>gnl|LJGI|TC81719 similar to UniRef100_Q0WQ17 Cluster: RNA-binding-like protein; n=1;
Arabidopsis thaliana|Rep: RNA-binding-like protein -
Arabidopsis thaliana (Mouse-ear cress), partial (57%)
Length = 1421
Score = 285 bits (144), Expect = 1e-76
Identities = 204/224 (91%)
Strand = Plus / Plus
Query: 1 atgtgctcgagaacaatttactgcacaaatatcgacaagaagcttactcaggctgatgtc 60
|||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 974 atgtgctcaagaacaatttactgcacaaatattgacaagaagcttactcaatctgatgtc 1033
Query: 61 aaacacttctttgaatctatttgtggagaggttcaacggttgaggcttcttggcgattat 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 1034 aaaaacttctttgaatctatttgtggagaggttcaacggttgaggcttcttggggatcac 1093
Query: 121 catcattcaactcgaattgcattttttgagttcacagtggctgagagtgcaattgctgct 180
||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||
Sbjct: 1094 aatcattcaactcgaattgcttttgttgagttcaaagtggctgagagtgcaattgctgct 1153
Query: 181 ctaagctgtagcggtgtggctttgggttcactgcctataagggt 224
|| || || || |||||| |||||||| ||||||||||||||
Sbjct: 1154 ctgagttgcagtggtgtgatattgggttcgctgcctataagggt 1197
Score = 58.0 bits (29), Expect = 4e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 319 agggtaagtccatcgaagacaccggtacggtcccgcgttcttcgctctccaatgcactga 378
|||||||||||||| |||||||| || ||||| ||| || ||| |||||||||||||||
Sbjct: 1193 agggtaagtccatcaaagacaccagtccggtctcgctctcctcgttctccaatgcactga 1252
Query: 379 a 379
|
Sbjct: 1253 a 1253
>gnl|LJGI|TC61411 similar to UniRef100_A7QEW4 Cluster: Chromosome chr16 scaffold_86,
whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr16 scaffold_86, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (65%)
Length = 1558
Score = 278 bits (140), Expect = 2e-74
Identities = 203/224 (90%)
Strand = Plus / Plus
Query: 1 atgtgctcgagaacaatttactgcacaaatatcgacaagaagcttactcaggctgatgtc 60
|||||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 1080 atgtgctcaaggacaatttactgcacaaatattgacaagaagcttactcaatctgatgtc 1139
Query: 61 aaacacttctttgaatctatttgtggagaggttcaacggttgaggcttcttggcgattat 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 1140 aaaaacttctttgaatctatttgtggagaggttcaacggttgaggcttcttggggatcac 1199
Query: 121 catcattcaactcgaattgcattttttgagttcacagtggctgagagtgcaattgctgct 180
||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||
Sbjct: 1200 aatcattcaactcgaattgcttttgttgagttcaaagtggctgagagtgcaattgctgct 1259
Query: 181 ctaagctgtagcggtgtggctttgggttcactgcctataagggt 224
|| || || || |||||| |||||||| ||||||||||||||
Sbjct: 1260 ctgagttgcagtggtgtgatattgggttcgctgcctataagggt 1303
Score = 58.0 bits (29), Expect = 4e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 319 agggtaagtccatcgaagacaccggtacggtcccgcgttcttcgctctccaatgcactga 378
|||||||||||||| |||||||| || ||||| ||| || ||| |||||||||||||||
Sbjct: 1299 agggtaagtccatcaaagacaccagtccggtctcgctctcctcgttctccaatgcactga 1358
Query: 379 a 379
|
Sbjct: 1359 a 1359
>gnl|LJGI|TC81539 similar to UniRef100_Q94JR0 Cluster: At1g32790; n=1; Arabidopsis
thaliana|Rep: At1g32790 - Arabidopsis thaliana
(Mouse-ear cress), partial (25%)
Length = 670
Score = 125 bits (63), Expect = 2e-28
Identities = 93/103 (90%)
Strand = Plus / Plus
Query: 122 atcattcaactcgaattgcattttttgagttcacagtggctgagagtgcaattgctgctc 181
||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 2 atcattcaactcgaattgcttttgttgagttcaaagtggctgagagtgcaattgctgctc 61
Query: 182 taagctgtagcggtgtggctttgggttcactgcctataagggt 224
| || || || |||||| |||||||||||||||||||||||
Sbjct: 62 tgagttgcagtggtgtgatattgggttcactgcctataagggt 104
Score = 52.0 bits (26), Expect = 3e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 319 agggtaagtccatcgaagacaccggtacggtcccgcgttcttcgctctccaatg 372
|||||||||||||| || ||||| |||||||| ||| || |||||||||||||
Sbjct: 100 agggtaagtccatcaaaaacaccagtacggtctcgctctcctcgctctccaatg 153