Miyakogusa Predicted Gene

Lj0g3v0260169.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0260169.1 tr|F2CSR9|F2CSR9_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2
SV=1,43.94,1e-18,mTERF,Mitochodrial transcription termination
factor-related; CGI-12 PROTEIN-RELATED,NULL; seg,NULL; ,CUFF.17139.1
         (538 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC69690 similar to UniRef100_A2Q1V4 Cluster: Mitochodri...   620   e-177

>gnl|LJGI|TC69690 similar to UniRef100_A2Q1V4 Cluster: Mitochodrial transcription
           termination factor-related; n=1; Medicago
           truncatula|Rep: Mitochodrial transcription termination
           factor-related - Medicago truncatula (Barrel medic),
           partial (35%)
          Length = 596

 Score =  620 bits (313), Expect = e-177
 Identities = 313/313 (100%)
 Strand = Plus / Plus

                                                                       
Query: 226 ctgcgcgtgaaggtgaggtttctggaggaggacgtggggttgtcgtatgaggaggcggtt 285
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ctgcgcgtgaaggtgaggtttctggaggaggacgtggggttgtcgtatgaggaggcggtt 60

                                                                       
Query: 286 aacgtctgcgcgaggttgccggcgatcttcgggtacgacgtggagaacaatttgtggccc 345
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aacgtctgcgcgaggttgccggcgatcttcgggtacgacgtggagaacaatttgtggccc 120

                                                                       
Query: 346 aagtttgcgtttctggtggaggagatggagagggatttggaggagttgaagaagtttcct 405
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagtttgcgtttctggtggaggagatggagagggatttggaggagttgaagaagtttcct 180

                                                                       
Query: 406 cagtattttgggttcagtttggagaagaggattgtgccgaggcattttcatttgaaggag 465
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cagtattttgggttcagtttggagaagaggattgtgccgaggcattttcatttgaaggag 240

                                                                       
Query: 466 aggggcgtgaggatcccattgaaccgaatgttgatgtggggtgatgacaagttctacgcc 525
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aggggcgtgaggatcccattgaaccgaatgttgatgtggggtgatgacaagttctacgcc 300

                        
Query: 526 aagtggaagtagc 538
           |||||||||||||
Sbjct: 301 aagtggaagtagc 313