Miyakogusa Predicted Gene

Lj0g3v0259499.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0259499.1 Non Chatacterized Hit- tr|K3XE03|K3XE03_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si000120,72,0.0000000000001,DNA binding domain with preference for
A/T r,AT hook, DNA-binding motif; AT_hook,AT hook,
DNA-bindin,CUFF.17094.1
         (1068 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC61076                                                      244   9e-64

>gnl|LJGI|TC61076 
          Length = 742

 Score =  244 bits (123), Expect = 9e-64
 Identities = 159/171 (92%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaatgttggaggctccgtatgggcattagattggtgtcctcagatacatgaagagcct 60
           |||||||||||||||||| |||||||||||||||||||||| | |||||||||||| |||
Sbjct: 568 atgaatgttggaggctccatatgggcattagattggtgtccccggatacatgaagatcct 627

                                                                       
Query: 61  gattgttcagttaaatgtgagtttgttgctgttgctactcatccgcctggctcttcttat 120
           ||||||||| |||||||||||||| ||||||||||| ||||||| |||||||||||||||
Sbjct: 628 gattgttcaattaaatgtgagtttattgctgttgctgctcatccacctggctcttcttat 687

                                                              
Query: 121 cacaagatgggcgactcacttgttggtagaggtgtcgtacaaatatggtgt 171
           |||||||| || | |||||||| ||||||||||||||||||||||||||||
Sbjct: 688 cacaagattggtgcctcacttgctggtagaggtgtcgtacaaatatggtgt 738