Miyakogusa Predicted Gene
- Lj0g3v0257529.3
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0257529.3 tr|B9PCE8|B9PCE8_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_795088
PE=4,46.6,0.0000000000003,DNA REPAIR/TRANSCRIPTION PROTEIN
MET18/MMS19,NULL; seg,NULL,CUFF.16957.3
(1515 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC74371 similar to UniRef100_A7P731 Cluster: Chromosome... 410 e-113
gnl|LJGI|TC70592 similar to UniRef100_A7P731 Cluster: Chromosome... 293 2e-78
gnl|LJGI|BP056555 similar to UniRef100_A7P731 Cluster: Chromosom... 291 6e-78
gnl|LJGI|TC78170 similar to UniRef100_A7P731 Cluster: Chromosome... 196 3e-49
>gnl|LJGI|TC74371 similar to UniRef100_A7P731 Cluster: Chromosome chr9 scaffold_7,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr9 scaffold_7, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (8%)
Length = 575
Score = 410 bits (207), Expect = e-113
Identities = 246/259 (94%)
Strand = Plus / Plus
Query: 1225 agatctttcttgtatcgagcctatgcacatatcatctctgatactccgcagattgttata 1284
|||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||
Sbjct: 214 agatctttcttgtatcgagcttttgcacatatcatctctgatactccgctgattgttata 273
Query: 1285 gtgagtgaagctaaaaagctcataccagttctgctgaattgcttgtccatgttgacagat 1344
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 274 gtaagtgaagctaaaaagctcataccagttctgctgaattgcttgtccatgttgaccgaa 333
Query: 1345 gatatccaagataaagatatcttgtatggtctgttgctagtcttatctgggatattgact 1404
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gatattcaagataaagatattttgtatggtctgttgctagtcttatctgggatattgact 393
Query: 1405 gagaaaaatgggcaagaagctgtcactgagaatgcacatattatcatcaattgtctgatt 1464
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 394 gagaaaaatgggcaagaagctgtcacggagaatgcttatattatcatcaattgtctgatt 453
Query: 1465 aaactggtggactaccctc 1483
||| | |||||||||||||
Sbjct: 454 aaatttgtggactaccctc 472
Score = 295 bits (149), Expect = 4e-79
Identities = 198/215 (92%), Gaps = 7/215 (3%)
Strand = Plus / Plus
Query: 709 gcagagaactttaatgatcttaccttggaagaagctctggatgttatattcagcacaaaa 768
|||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 gcagagaactccaataatcttaccttggaagaagctctgaatgttatattcagcacaaaa 60
Query: 769 atatgggtttctagtactgatgtgttgcagggatgtaatggaacaaataatgggagtgaa 828
|||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 61 atatgggtttgtagtactgatgtgttgcagggatgtaatggagcagataatgggagtgaa 120
Query: 829 atggttcttactgatttgtgcctgggcattgcaaatgatagattac-------ttcaaac 881
|||||||||||||| | |||||||||||||||||||||||||||| |||||||
Sbjct: 121 atggttcttactgaataatgcctgggcattgcaaatgatagattacttcaaagttcaaac 180
Query: 882 caatgccatttgtgggctctcatggattggaaaag 916
|||||||||||||||||||||||||||||||||||
Sbjct: 181 caatgccatttgtgggctctcatggattggaaaag 215
>gnl|LJGI|TC70592 similar to UniRef100_A7P731 Cluster: Chromosome chr9 scaffold_7,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr9 scaffold_7, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (9%)
Length = 525
Score = 293 bits (148), Expect = 2e-78
Identities = 156/159 (98%)
Strand = Plus / Plus
Query: 1354 gataaagatatcttgtatggtctgttgctagtcttatctgggatattgactgagaaaaat 1413
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 gataaagatatcttgtatgttctnttgctagtcttatctgggatattgactgagaaaaat 60
Query: 1414 gggcaagaagctgtcactgagaatgcacatattatcatcaattgtctgattaaactggtg 1473
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 61 gggcaagaagctgtcactgagaatgcacatattatcatccattgtctgattaaactggtg 120
Query: 1474 gactaccctcataagacgcttgttcgagagacagctgtt 1512
|||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gactaccctcataagacgcttgttcgagagacagctgtt 159
>gnl|LJGI|BP056555 similar to UniRef100_A7P731 Cluster: Chromosome chr9 scaffold_7,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr9 scaffold_7, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (6%)
Length = 428
Score = 291 bits (147), Expect = 6e-78
Identities = 180/191 (94%)
Strand = Plus / Minus
Query: 1225 agatctttcttgtatcgagcctatgcacatatcatctctgatactccgcagattgttata 1284
|||||||||||||||||||| | |||||||||||||||||||||||| | ||||||||||
Sbjct: 417 agatctttcttgtatcgagcttttgcacatatcatctctgatactcccctgattgttata 358
Query: 1285 gtgagtgaagctaaaaagctcataccagttctgctgaattgcttgtccatgttgacagat 1344
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 357 gtaagtgaagctaaaaagctcatacccgttctgctgaattgcttgtccatgttgaccgaa 298
Query: 1345 gatatccaagataaagatatcttgtatggtctgttgctagtcttatctgggatattgact 1404
||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gatattccagataaagatattttgtatggtctgttgctagtcttatctgggatattgact 238
Query: 1405 gagaaaaatgg 1415
|||||||||||
Sbjct: 237 gagaaaaatgg 227
>gnl|LJGI|TC78170 similar to UniRef100_A7P731 Cluster: Chromosome chr9 scaffold_7,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr9 scaffold_7, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (7%)
Length = 913
Score = 196 bits (99), Expect = 3e-49
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 1414 gggcaagaagctgtcactgagaatgcacatattatcatcaattgtctgattaaactggtg 1473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gggcaagaagctgtcactgagaatgcacatattatcatcaattgtctgattaaactggtg 459
Query: 1474 gactaccctcataagacgcttgttcgagagacagctgtt 1512
|||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gactaccctcataagacgcttgttcgagagacagctgtt 498