Miyakogusa Predicted Gene

Lj0g3v0257529.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0257529.1 tr|G7LH09|G7LH09_MEDTR Pentatricopeptide
repeat-containing protein OS=Medicago truncatula
GN=MTR_8g0,71.11,0,PPR: pentatricopeptide repeat
domain,Pentatricopeptide repeat; PENTATRICOPEPTIDE (PPR)
REPEAT-CONTAI,CUFF.16957.1
         (2467 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|DC597835 similar to UniRef100_A7PEW9 Cluster: Chromosom...   729   0.0  

>gnl|LJGI|DC597835 similar to UniRef100_A7PEW9 Cluster: Chromosome chr11 scaffold_13,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr11 scaffold_13, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (4%)
          Length = 572

 Score =  729 bits (368), Expect = 0.0
 Identities = 373/375 (99%)
 Strand = Plus / Plus

                                                                       
Query: 157 gccgcaggacccgacatctacggagaactcctccaaggatgcgtctacgctagagacctg 216
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 198 gccgcaggacccgacatctacggagaactcctccaaggatgcgtctacgctagagacctc 257

                                                                       
Query: 217 ggtctcggccttcaaatccacgcccacgtcataaaaaacggtccctccttctcccaaaac 276
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ggtctcggccttcaaatccacgcccacgtcataaaaaacggtccctccttctcccaaaac 317

                                                                       
Query: 277 aacttcctccacaccaagctgctcatcctctacgccaaatgcggccactcccacgtcgcc 336
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aacttcctccacaccaagctgctcatcctctacgccaaatgcggccactcccacgtcgcc 377

                                                                       
Query: 337 ttccgcctcttcgacaacctaccggagcagaatctcttctcctgggccgccattttgggc 396
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttccgcctcttcgacaacctaccggagcagaatctcttctcctgggccgccattttgggc 437

                                                                       
Query: 397 ctgcaagcccgaacgggtcgttcccatgaagcgctctccagctacgtccggatgaaagaa 456
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ctgcaagcccgaacgggtcgttcccatgaagcgctctccagctacgtccggatgaaagaa 497

                                                                       
Query: 457 aacggcttctctccggacaattttgtcgtccccaacgcgctcaaggcctgcggggccctc 516
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 498 aacggcttctctccggacaattttgtcgtccccaacgcgctcaaggcctgcggngccctc 557

                          
Query: 517 cgttggctcgggttc 531
           |||||||||||||||
Sbjct: 558 cgttggctcgggttc 572



 Score =  135 bits (68), Expect = 1e-30
 Identities = 68/68 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcattgtatatcttgtcttcccctcacacccaacaccgccctacaacttccccattcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42  atgcattgtatatcttgtcttcccctcacacccaacaccgccctacaacttccccattcc 101

                   
Query: 61  aaatctca 68
           ||||||||
Sbjct: 102 aaatctca 109