Miyakogusa Predicted Gene
- Lj0g3v0257359.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0257359.2 Non Chatacterized Hit- tr|H0X9P8|H0X9P8_OTOGA
Uncharacterized protein (Fragment) OS=Otolemur garnett,30.27,1e-17,RNA
recognition motif,RNA recognition motif domain; RNA-binding domain,
RBD,NULL; SUBFAMILY NOT NAME,CUFF.16913.2
(801 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC72747 similar to UniRef100_A7QWN7 Cluster: Chromosome... 1116 0.0
gnl|LJGI|TC68887 similar to UniRef100_A7QWN7 Cluster: Chromosome... 781 0.0
>gnl|LJGI|TC72747 similar to UniRef100_A7QWN7 Cluster: Chromosome chr4 scaffold_205,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_205, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (74%)
Length = 835
Score = 1116 bits (563), Expect = 0.0
Identities = 598/613 (97%), Gaps = 1/613 (0%)
Strand = Plus / Plus
Query: 1 atgttcggatcgaggggggcaatgttggggagcnnnnnnntatcggacgggtacgaggtt 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 223 atgttcggatcgaggggggcaatgttggggagcgggggggtatcggacgggtacgaggtt 282
Query: 61 ggctcaaagagacaaagaatgatggaatccaatccatacttcgcagtgagcagcggacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ggctcaaagagacaaagaatgatggaatccaatccatacttcgcagtgagcagcggacca 342
Query: 121 ggcagctttcaaccttatgggtatgctggaggcttccagccgcctcctccctttccagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ggcagctttcaaccttatgggtatgctggaggcttccagccgcctcctccctttccagtg 402
Query: 181 gttcgtctcagggggctcccgttcaactgcacagatattgacattttgaaattctttgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gttcgtctcagggggctcccgttcaactgcacagatattgacattttgaaattctttgct 462
Query: 241 ggactgaccattgtggatgtgttgttggtcaacaagagtgggcggttctcaggagaggcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ggactgaccattgtggatgtgttgttggtcaacaagagtgggcggttctcaggagaggcc 522
Query: 301 tttgttgtctttccaggagcaatgcaggttgagtttgctttgcagagggatcggcagaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tttgttgtctttccaggagcaatgcaggttgagtttgctttgcagagggatcggcagaac 582
Query: 361 atgggtcgcagatacgtggaagtgttcaggtgtaagaagcaggattattacaatgctgtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 atgggtcgcagatacgtggaagtgttcaggtgtaagaagcaggattattacaatgctgtt 642
Query: 421 gctggtgaggtcagctacgaaggaatatatgataa-tgattaccatggaagccctccccc 479
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 643 gctggtgaggtcagctacgaaggaatatatgataattgattaccatggaagccctccccc 702
Query: 480 ctctcggtccaagaggttcagtgataaagaacaaatggaatatactgagatcttgaagat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ctctcggtccaagaggttcagtgataaagaacaaatggaatatactgagatcttgaagat 762
Query: 540 gcgtggacttccatttgcagtgactaaatctcaaattgttgannnnnnnaaggattacaa 599
|||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 763 gcgtggacttccatttgcagtgactaaatctcaaattgttgatttttttaaggattacaa 822
Query: 600 gctgatagaagac 612
|||||||||||||
Sbjct: 823 gctgatagaagac 835
>gnl|LJGI|TC68887 similar to UniRef100_A7QWN7 Cluster: Chromosome chr4 scaffold_205,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_205, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (93%)
Length = 1133
Score = 781 bits (394), Expect = 0.0
Identities = 400/402 (99%)
Strand = Plus / Plus
Query: 41 tatcggacgggtacgaggttggctcaaagagacaaagaatgatggaatccaatccatact 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 tatcggacgggtacgaggttggctcaaagagacaaagaatgatggaatccaatccatact 218
Query: 101 tcgcagtgagcagcggaccaggcagctttcaaccttatgggtatgctggaggcttccagc 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tcgcagtgagcagcggaccaggcagctttcaaccttatgggtatgctggaggcttccagc 278
Query: 161 cgcctcctccctttccagtggttcgtctcagggggctcccgttcaactgcacagatattg 220
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 279 cgcctcctccctttccagtggttcgtctcagggggctcccgttcaactgcacggatattg 338
Query: 221 acattttgaaattctttgctggactgaccattgtggatgtgttgttggtcaacaagagtg 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 acattttgaaattctttgctggactgaccattgtggatgtgttgttggtcaacaagagtg 398
Query: 281 ggcggttctcaggagaggcctttgttgtctttccaggagcaatgcaggttgagtttgctt 340
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gacggttctcaggagaggcctttgttgtctttccaggagcaatgcaggttgagtttgctt 458
Query: 341 tgcagagggatcggcagaacatgggtcgcagatacgtggaagtgttcaggtgtaagaagc 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tgcagagggatcggcagaacatgggtcgcagatacgtggaagtgttcaggtgtaagaagc 518
Query: 401 aggattattacaatgctgttgctggtgaggtcagctacgaag 442
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 aggattattacaatgctgttgctggtgaggtcagctacgaag 560
Score = 545 bits (275), Expect = e-154
Identities = 301/312 (96%)
Strand = Plus / Plus
Query: 490 aagaggttcagtgataaagaacaaatggaatatactgagatcttgaagatgcgtggactt 549
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aagagtttcggtgataaagaacaaatggaatatactgagatcttgaagatgcgtggactt 617
Query: 550 ccatttgcagtgactaaatctcaaattgttgannnnnnnaaggattacaagctgatagaa 609
|||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 618 ccatttgcagtgactaaatctcaaattgttgatttttttaaggattacaagctgatagaa 677
Query: 610 gacagggtacacattgcatgtcgccctgatgggaaagctactggtgaggcatatgtggag 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gacagggtacacattgcatgtcgccctgatgggaaagctactggtgaggcatatgtggag 737
Query: 670 tttgtctctcctgatgaggctaagagagcaatgtccaaggataaaatgatgattggatca 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tttgtctctcctgatgaggctaagagagcaatgtccaaggataaaatgatgattggatca 797
Query: 730 aggtatgtggaactgtttccttccacaccagatgaagctagacgggctgagtcaagatca 789
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 798 aggtatgtggaactgtttccttccacacccgatgaagctagacgggctgagtcaagatca 857
Query: 790 aggcagtaatct 801
|||| |||||||
Sbjct: 858 aggccgtaatct 869
Score = 73.8 bits (37), Expect = 1e-12
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 421 gctggtgaggtcagctacgaaggaatatatgataatg 457
|||||||||||||||||||||||||||||||||||||
Sbjct: 106 gctggtgaggtcagctacgaaggaatatatgataatg 142