Miyakogusa Predicted Gene
- Lj0g3v0254499.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0254499.1 Non Chatacterized Hit- tr|A3AP47|A3AP47_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,50,3e-19,Retrovirus zinc finger-like domains,Zinc finger,
CCHC-type; zinc finger,Zinc finger, CCHC-type; zf-C,CUFF.16777.1
(515 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58333 similar to UniRef100_A7P7X8 Cluster: Chromosome... 561 e-159
gnl|LJGI|BW595772 similar to UniRef100_A7P7X8 Cluster: Chromosom... 488 e-137
gnl|LJGI|TC77578 similar to UniRef100_A7P7X8 Cluster: Chromosome... 274 5e-73
gnl|LJGI|AV768119 52 3e-06
>gnl|LJGI|TC58333 similar to UniRef100_A7P7X8 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (74%)
Length = 794
Score = 561 bits (283), Expect = e-159
Identities = 283/283 (100%)
Strand = Plus / Plus
Query: 1 atggcaagcagttgtccaaatgagggcatttgccacacctgtggcaaagttggacaccgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 atggcaagcagttgtccaaatgagggcatttgccacacctgtggcaaagttggacaccgt 571
Query: 61 gctagggagtgctcagctcctcctatgcctccaggggacttgaggttgtgcaacaactgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gctagggagtgctcagctcctcctatgcctccaggggacttgaggttgtgcaacaactgt 631
Query: 121 tataagcagggccatattgcagttgaatgtactaatgagaaggcgtgcaacaactgtagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tataagcagggccatattgcagttgaatgtactaatgagaaggcgtgcaacaactgtagg 691
Query: 181 aagacaggtcacctcgcacgtgattgtccaaatgatcccatctgcaacttgtgcaatgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 aagacaggtcacctcgcacgtgattgtccaaatgatcccatctgcaacttgtgcaatgtt 751
Query: 241 tctgggcatgtggctagacagtgtccaaaatccaacattctag 283
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 tctgggcatgtggctagacagtgtccaaaatccaacattctag 794
>gnl|LJGI|BW595772 similar to UniRef100_A7P7X8 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (53%)
Length = 490
Score = 488 bits (246), Expect = e-137
Identities = 246/246 (100%)
Strand = Plus / Plus
Query: 1 atggcaagcagttgtccaaatgagggcatttgccacacctgtggcaaagttggacaccgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 atggcaagcagttgtccaaatgagggcatttgccacacctgtggcaaagttggacaccgt 304
Query: 61 gctagggagtgctcagctcctcctatgcctccaggggacttgaggttgtgcaacaactgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gctagggagtgctcagctcctcctatgcctccaggggacttgaggttgtgcaacaactgt 364
Query: 121 tataagcagggccatattgcagttgaatgtactaatgagaaggcgtgcaacaactgtagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tataagcagggccatattgcagttgaatgtactaatgagaaggcgtgcaacaactgtagg 424
Query: 181 aagacaggtcacctcgcacgtgattgtccaaatgatcccatctgcaacttgtgcaatgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aagacaggtcacctcgcacgtgattgtccaaatgatcccatctgcaacttgtgcaatgtt 484
Query: 241 tctggg 246
||||||
Sbjct: 485 tctggg 490
>gnl|LJGI|TC77578 similar to UniRef100_A7P7X8 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (16%)
Length = 435
Score = 274 bits (138), Expect = 5e-73
Identities = 144/146 (98%)
Strand = Plus / Plus
Query: 370 tgccagcaactggggcaaatgagcagggattgcatgggaccattgatgatctgtcacaat 429
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 tgccagcaactgggtcacatgagcagggattgcatgggaccattgatgatctgtcacaat 62
Query: 430 tgtggaggtcgtggtcacctggcctatgagtgcccttctggtcggtttatggatcgctat 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 tgtggaggtcgtggtcacctggcctatgagtgcccttctggtcggtttatggatcgctat 122
Query: 490 gcaccaaacacaaggaggtactgatc 515
||||||||||||||||||||||||||
Sbjct: 123 gcaccaaacacaaggaggtactgatc 148
>gnl|LJGI|AV768119
Length = 255
Score = 52.0 bits (26), Expect = 3e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 470 gtcggtttatggatcgctatgcaccaaacacaaggaggtactgatc 515
|||||||||||||||||||||| || | | |||||||| |||||||
Sbjct: 255 gtcggtttatggatcgctatgcccccaccccaaggaggaactgatc 210