Miyakogusa Predicted Gene
- Lj0g3v0254439.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0254439.1 Non Chatacterized Hit- tr|I1QK81|I1QK81_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1,25.98,1e-17,no
description,Armadillo-like helical; PUM,Pumilio RNA-binding repeat;
PUM_HD,Pumilio RNA-binding re,CUFF.16731.1
(1353 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC62005 homologue to UniRef100_Q2HS37 Cluster: Nucleic ... 1744 0.0
gnl|LJGI|AV409964 similar to UniRef100_A7PIR4 Cluster: Chromosom... 139 5e-32
>gnl|LJGI|TC62005 homologue to UniRef100_Q2HS37 Cluster: Nucleic acid binding NABP;
n=1; Medicago truncatula|Rep: Nucleic acid binding NABP -
Medicago truncatula (Barrel medic), partial (32%)
Length = 1412
Score = 1744 bits (880), Expect = 0.0
Identities = 925/940 (98%)
Strand = Plus / Plus
Query: 379 ggccatgttgttgaattcagtgctgatcaatatgggagccggtttatccaacaaaagctt 438
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ggccatgttgttgaattcagtgctgatcaatatgggagccggtttatccaacaaaagctg 63
Query: 439 gaaacagcaactactgaagaaaaaactatggtttatcaggaaattatgcctcatgctctt 498
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 64 gaaacagcaactactgaagaaaagaccatggtttatcaggaaattatgcctcatgctctt 123
Query: 499 gcgttgatgactgatgtctttggtaattatgtggttcaaaagttttttgagcatggactt 558
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 124 gcattgatgactgatgtctttggtaattatgtggttcagaagttttttgagcatggactt 183
Query: 559 gcatcccagagaagagagttagccaacaagctatttagccatgttctgacacttagcctt 618
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 184 gcatcccagagaagagagttagccaacaagctttttagccatgttctggcacttagcctt 243
Query: 619 caaatgtatggttgtcgggtcatccagaaggccatagaagttgttgatctagaccagaag 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 caaatgtatggttgtcgggtcatccagaaggccatagaagttgttgatctagaccagaag 303
Query: 679 ataaagatggttcaagagcttgatggtaatatcatgcgctgtgtacgagatcagaatggt 738
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ataaatatggttcaggagcttgatggtaatatcatgcgctgtgtacgagatcagaatggt 363
Query: 739 aaccatgttattcagaagtgtattgaatgtgtacctgaagatgcaatcgactttattgtc 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aaccatgttattcagaagtgtattgaatgtgtacctgaagatgcaatcgactttattgtc 423
Query: 799 tcaaccttttttgatcaagttgtgacactatcaacccatccatatggatgtcgggtgata 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tcaaccttttttgatcaagttgtgacactatcaacccatccatatggatgtcgggtgata 483
Query: 859 cagagagtcctggagcactgcaaagaccctaacacacagcaaaaagttatggatgagatt 918
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 484 cagagagtcctggagcactgcaaagatcctaacacacagcaaaaagttatggatgagatt 543
Query: 919 ttaggagcagttagcatgttagcccaggatcagtacggaaactatgttgtccagcatgta 978
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ttaggggcagttagcatgttagcccaggatcagtacggaaactatgttgtccagcatgta 603
Query: 979 cttgagcatgggaaacctcatgagcgttcagctattatcaaggaattaactggcaatatt 1038
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 604 cttgagcatgggaaacctcatgagcgttcagctattatcaaggaattagctggcaatatt 663
Query: 1039 gttcaaatgagccaacagaagtttgcctcaaatgttgtggagaagtgtttggcctttgga 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gttcaaatgagccaacagaagtttgcctcaaatgttgtggagaagtgtttggcctttgga 723
Query: 1099 ggtcctgctgaacgccaatttcttgtgaatgagatgcttggatccacggatgaaaatgag 1158
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 724 ggtcctgctgaacgccaattccttgtgaatgagatgctcggatccacggatgaaaatgag 783
Query: 1159 cctcttcaggccatgatgaaagatcaatttgctaattatgttgtgcaaaaggtgctggag 1218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 cctcttcaggccatgatgaaagatcaatttgctaattatgttgtgcaaaaggtgctggag 843
Query: 1219 acttgtgatgaccatcagcgtgagctaattctttcacgaattaaagtccatctgaatgca 1278
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 844 acttgtgatgaccatcagcgtgagctaattctttcacgaattaaagtccatttgaatgca 903
Query: 1279 ttgaaaaaatacacctacggaaagcatattgtcgcacgtg 1318
||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 ttgaaaaaatacacctacggaaagcatattgtcgcacgtg 943
>gnl|LJGI|AV409964 similar to UniRef100_A7PIR4 Cluster: Chromosome chr13 scaffold_17,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_17, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (25%)
Length = 434
Score = 139 bits (70), Expect = 5e-32
Identities = 172/206 (83%)
Strand = Plus / Plus
Query: 331 gagtttaaaagcaacaaaacaaaatgttttgagctttctgaaatttccggccatgttgtt 390
||||| |||||||||||||| ||||| ||||| ||| | |||||| | ||||||||||||
Sbjct: 225 gagttcaaaagcaacaaaaccaaatgctttgaacttgcagaaattgctggccatgttgtt 284
Query: 391 gaattcagtgctgatcaatatgggagccggtttatccaacaaaagcttgaaacagcaact 450
|| |||||| |||| || ||||| ||||| ||||||||||| || ||||| ||||| ||
Sbjct: 285 gacttcagttctgaccagtatggaagccgttttatccaacagaaacttgagacagccaca 344
Query: 451 actgaagaaaaaactatggtttatcaggaaattatgcctcatgctcttgcgttgatgact 510
| || || |||| |||||||| || ||||| ||||| || |||||| | ||||||||
Sbjct: 345 atggacgagaaaaatatggttttccatgaaatcatgccacaggctctttctctgatgact 404
Query: 511 gatgtctttggtaattatgtggttca 536
||||||||||||||||||||| ||||
Sbjct: 405 gatgtctttggtaattatgtgattca 430