Miyakogusa Predicted Gene

Lj0g3v0254419.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0254419.1 tr|Q5JMD6|Q5JMD6_ORYSJ Os01g0971900 protein
OS=Oryza sativa subsp. japonica GN=P0518C01.18 PE=4
SV=1,55.88,4e-19,seg,NULL; PUMILIO 1, 2,NULL; RNA BINDING PROTEIN
PUMILIO-RELATED,NULL,CUFF.16729.1
         (517 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC76226 similar to UniRef100_Q2HS37 Cluster: Nucleic ac...   628   e-180
gnl|LJGI|AV408200 similar to UniRef100_Q2HS37 Cluster: Nucleic a...   410   e-114
gnl|LJGI|TC73291 similar to UniRef100_A7NYW6 Cluster: Chromosome...   353   7e-97

>gnl|LJGI|TC76226 similar to UniRef100_Q2HS37 Cluster: Nucleic acid binding NABP;
           n=1; Medicago truncatula|Rep: Nucleic acid binding NABP
           - Medicago truncatula (Barrel medic), partial (24%)
          Length = 894

 Score =  628 bits (317), Expect = e-180
 Identities = 362/382 (94%), Gaps = 3/382 (0%)
 Strand = Plus / Plus

                                                                       
Query: 138 tcggtataggagtggatcagcgcctccaactgtggagggttctctgaatgcagttggagg 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4   tcggtataggagtggatcagcgcctccaactgtggagggttctctgaatgcagttggagg 63

                                                                       
Query: 198 gttgtttggannnnnnnnnnnnnnnnn---tctcgctggcccattttctgaatttcctgg 254
           ||||||||||                    ||||||||||||||||||||||||||||||
Sbjct: 64  gttgtttggaggcggaggcggcggcggcggtctcgctggcccattttctgaatttcctgg 123

                                                                       
Query: 255 ggctaaccatgagaatgattttgcgtctgaggaagagcttaggtctgatccggcttatct 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 ggctaaccatgagaatgattttgcgtctgaggaagagcttaggtctgatccggcttatct 183

                                                                       
Query: 315 tcaatactattactccaatgtgaatttgaatcctcgacttccgcctcctttgctatcaaa 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tcaatactattactccaatgtgaatttgaatcctcgacttccgcctcctttgctatcaaa 243

                                                                       
Query: 375 ggaggattggaggtctgcacagagagcttcagttcttggtggaattggagataggagaaa 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ggaggattggaggtctgcacagagagcttcagttcttggtggaattggagataggagaaa 303

                                                                       
Query: 435 agtgaacagggttgatgacagtggtgctagatcattgtttgcaacccctccggggtttaa 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 agtgaacagggttgatgacagtggtgctagatcattgtttgcaacccctccggggtttaa 363

                                 
Query: 495 ctcgaggaagtcagagagtgag 516
           ||||||||||||||||||||||
Sbjct: 364 ctcgaggaagtcagagagtgag 385


>gnl|LJGI|AV408200 similar to UniRef100_Q2HS37 Cluster: Nucleic acid binding NABP;
           n=1; Medicago truncatula|Rep: Nucleic acid binding NABP
           - Medicago truncatula (Barrel medic), partial (6%)
          Length = 369

 Score =  410 bits (207), Expect = e-114
 Identities = 207/207 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgctgtctgaactgggtaggaggccggtgctgggtgggaacgagggttcttttggtgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 atgctgtctgaactgggtaggaggccggtgctgggtgggaacgagggttcttttggtgat 198

                                                                       
Query: 61  gaattggataaggagatagggatgttgcttcgtgagcagcggcggcaggatgttgatgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gaattggataaggagatagggatgttgcttcgtgagcagcggcggcaggatgttgatgat 258

                                                                       
Query: 121 cacgagcgcgagctcaatcggtataggagtggatcagcgcctccaactgtggagggttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cacgagcgcgagctcaatcggtataggagtggatcagcgcctccaactgtggagggttct 318

                                      
Query: 181 ctgaatgcagttggagggttgtttgga 207
           |||||||||||||||||||||||||||
Sbjct: 319 ctgaatgcagttggagggttgtttgga 345


>gnl|LJGI|TC73291 similar to UniRef100_A7NYW6 Cluster: Chromosome chr6 scaffold_3,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr6 scaffold_3, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (13%)
          Length = 669

 Score =  353 bits (178), Expect = 7e-97
 Identities = 181/182 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgctgtctgaactgggtaggaggccggtgctgggtgggaacgagggttcttttggtgat 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 485 atgctgtctgaactgggtaggaggccggtgctgggtgggaacaagggttcttttggtgat 544

                                                                       
Query: 61  gaattggataaggagatagggatgttgcttcgtgagcagcggcggcaggatgttgatgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaattggataaggagatagggatgttgcttcgtgagcagcggcggcaggatgttgatgat 604

                                                                       
Query: 121 cacgagcgcgagctcaatcggtataggagtggatcagcgcctccaactgtggagggttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 cacgagcgcgagctcaatcggtataggagtggatcagcgcctccaactgtggagggttct 664

             
Query: 181 ct 182
           ||
Sbjct: 665 ct 666