Miyakogusa Predicted Gene

Lj0g3v0254309.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0254309.1 tr|G7K3J1|G7K3J1_MEDTR
TIR-similar-domain-containing protein TSDC OS=Medicago truncatula
GN=MTR_5g09,44,5e-19,coiled-coil,NULL; seg,NULL,CUFF.16699.1
         (460 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC78835 similar to UniRef100_A8VXI4 Cluster: Envelope g...    96   2e-19
gnl|LJGI|TC59928 weakly similar to UniRef100_A7PQ35 Cluster: Chr...    56   2e-07
gnl|LJGI|TC61600 similar to UniRef100_A6QUQ6 Cluster: Predicted ...    54   8e-07

>gnl|LJGI|TC78835 similar to UniRef100_A8VXI4 Cluster: Envelope glycoprotein; n=1;
           Human immunodeficiency virus 1|Rep: Envelope
           glycoprotein - Human immunodeficiency virus 1, partial
           (7%)
          Length = 663

 Score = 95.6 bits (48), Expect = 2e-19
 Identities = 111/132 (84%)
 Strand = Plus / Plus

                                                                       
Query: 77  ttgaaaaggagaagctgatggcaaaccgtgatagtgtgctggaaaaggttgaagccacaa 136
           |||||||||||||||||||  |||| |  |  | ||||||| ||| ||||||||  ||||
Sbjct: 149 ttgaaaaggagaagctgatttcaaatctaggcattgtgctgaaaatggttgaagatacaa 208

                                                                       
Query: 137 acaaaacaaaaagagtcaatgatgctgtttgggagtggctaaaagatgcagagaaactca 196
           ||| |||| ||| ||||||||||||||||  ||||||| |||| ||||| || |||||||
Sbjct: 209 acagaacagaaaaagtcaatgatgctgttatggagtggttaaatgatgccgaaaaactca 268

                       
Query: 197 tagaagaggaga 208
           ||||||||||||
Sbjct: 269 tagaagaggaga 280


>gnl|LJGI|TC59928 weakly similar to UniRef100_A7PQ35 Cluster: Chromosome chr18
           scaffold_24, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr18 scaffold_24, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (15%)
          Length = 1253

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 137 acaaaacaaaaagagtcaatgatgctgtttgggagtggctaaaa 180
           |||||||| ||  ||| |||||||||||||||||||||||||||
Sbjct: 340 acaaaacagaagaagtaaatgatgctgtttgggagtggctaaaa 383


>gnl|LJGI|TC61600 similar to UniRef100_A6QUQ6 Cluster: Predicted protein; n=1;
           Ajellomyces capsulatus NAm1|Rep: Predicted protein -
           Ajellomyces capsulata (strain NAm1) (Histoplasma
           capsulatum), partial (6%)
          Length = 845

 Score = 54.0 bits (27), Expect = 8e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 340 aaatgtgaatttgagccattttccatcccaa 370
           ||||||||||||||||||||||||| |||||
Sbjct: 490 aaatgtgaatttgagccattttccaccccaa 520