Miyakogusa Predicted Gene
- Lj0g3v0253729.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0253729.1 Non Chatacterized Hit- tr|B9RRM5|B9RRM5_RICCO
Spliceosome associated protein, putative OS=Ricinus
co,30.77,0.000002,seg,NULL; RRM,RNA recognition motif domain;
RNA-binding domain, RBD,NULL; RNA recognition motif,RNA ,CUFF.16648.1
(870 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC69097 similar to UniRef100_A7PUX9 Cluster: Chromosome... 1725 0.0
>gnl|LJGI|TC69097 similar to UniRef100_A7PUX9 Cluster: Chromosome chr4 scaffold_32,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_32, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (82%)
Length = 1630
Score = 1725 bits (870), Expect = 0.0
Identities = 870/870 (100%)
Strand = Plus / Plus
Query: 1 atgattaagctttatggaaaaccaatacgcgtaaataaggcatcccaggataagaagagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 atgattaagctttatggaaaaccaatacgcgtaaataaggcatcccaggataagaagagc 542
Query: 61 ttggatgttggagcaaaccttttcattggcaatctggatcctgatgtagatgagaagcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ttggatgttggagcaaaccttttcattggcaatctggatcctgatgtagatgagaagcta 602
Query: 121 ttgtatgacactttcagtgcgtttggagttattgttactaatccaaagatcatgagagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ttgtatgacactttcagtgcgtttggagttattgttactaatccaaagatcatgagagat 662
Query: 181 cctgacacaggaaactcccgaggttttggcttcattagctacgattcatttgaggcatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 cctgacacaggaaactcccgaggttttggcttcattagctacgattcatttgaggcatct 722
Query: 241 gattcagctattgaggcaatgaatggacaatatctttgcaatcgccaaattacagtgtca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 gattcagctattgaggcaatgaatggacaatatctttgcaatcgccaaattacagtgtca 782
Query: 301 tatgcttataaaaaggacaccaaaggtgaaaggcatggtactcctgcagaaagagttttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 tatgcttataaaaaggacaccaaaggtgaaaggcatggtactcctgcagaaagagttttg 842
Query: 361 gctgcaagtaatccaactgcacaaaagagcaggcctcatactttatttgctagtgggcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 gctgcaagtaatccaactgcacaaaagagcaggcctcatactttatttgctagtgggcct 902
Query: 421 ccaacactcgcaggtgctcctcaggctaatggcaccattgctgcaccagtgcctccgcgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 ccaacactcgcaggtgctcctcaggctaatggcaccattgctgcaccagtgcctccgcgc 962
Query: 481 ccctttgcgaatggggttgctccacccgccctacgtcaaccacctccgcctcaagctgca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 ccctttgcgaatggggttgctccacccgccctacgtcaaccacctccgcctcaagctgca 1022
Query: 541 cccttccagcctatgccgggacaaccaacatggcatcaacagcagccaggtcaattacca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 cccttccagcctatgccgggacaaccaacatggcatcaacagcagccaggtcaattacca 1082
Query: 601 ccacccacaatgcctccacctcagtaccagcagttcaggccacctccctctggtatgcag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1083 ccacccacaatgcctccacctcagtaccagcagttcaggccacctccctctggtatgcag 1142
Query: 661 atgcctccacctccacaaggtgttccaggtcctccaaggcatcttccaccgccagcagta 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1143 atgcctccacctccacaaggtgttccaggtcctccaaggcatcttccaccgccagcagta 1202
Query: 721 atgggaggccagccaccacaggtttggcggccaccaccaccaccacaatatcagcaacag 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1203 atgggaggccagccaccacaggtttggcggccaccaccaccaccacaatatcagcaacag 1262
Query: 781 gttggacgcccgatggcatatcctcagtcttcaatgccacctccaccaccacttcccaat 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1263 gttggacgcccgatggcatatcctcagtcttcaatgccacctccaccaccacttcccaat 1322
Query: 841 aaccatgggatgccaccgccttcaagttga 870
||||||||||||||||||||||||||||||
Sbjct: 1323 aaccatgggatgccaccgccttcaagttga 1352