Miyakogusa Predicted Gene

Lj0g3v0253369.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0253369.1 Non Chatacterized Hit- tr|I1PA63|I1PA63_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,35.61,1e-18,CCT,CCT domain;
seg,NULL,NODE_34062_length_1388_cov_165.608063.path2.1
         (1113 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC74379 similar to UniRef100_Q93WK5 Cluster: Two-compon...   242   4e-63

>gnl|LJGI|TC74379 similar to UniRef100_Q93WK5 Cluster: Two-component response
           regulator-like APRR7; n=1; Arabidopsis thaliana|Rep:
           Two-component response regulator-like APRR7 -
           Arabidopsis thaliana (Mouse-ear cress), partial (9%)
          Length = 496

 Score =  242 bits (122), Expect = 4e-63
 Identities = 127/129 (98%)
 Strand = Plus / Plus

                                                                       
Query: 833 caaacgtaggaagcaacaatggactcactgggaatagtggcagtggtgatgctagtggga 892
           |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1   caaacgtaggaagccacaatggactcactgggaatagtgncagtggtgatgctagtggga 60

                                                                       
Query: 893 gtggaagtgccaacagagtagatcaaaacaaggcttctcaaaggcaggcagccctaacta 952
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gtggaagtgccaacagagtagatcaaaacaaggcttctcaaaggcaggcagccctaacta 120

                    
Query: 953 aatttcgcc 961
           |||||||||
Sbjct: 121 aatttcgcc 129



 Score =  218 bits (110), Expect = 6e-56
 Identities = 122/126 (96%)
 Strand = Plus / Plus

                                                                        
Query: 988  tgctttcataaaaaggttcgatatcagagcagaaagagattagctgaacaacaacctcga 1047
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 156  tgctttcataaaaaggttcgatatcagagcagaaagagattagctgaacaacgacctcga 215

                                                                        
Query: 1048 ttccgcagacaatttgttcgacaatcctcaaacgaaaatgcaagtgaggcaacagatagc 1107
            |||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 216  ttccgcggacaatttgttcgacagtcctcaaacgaaaatgcaagtggggcaacagatagc 275

                  
Query: 1108 tgattc 1113
            ||||||
Sbjct: 276  tgattc 281