Miyakogusa Predicted Gene

Lj0g3v0252719.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0252719.1 Non Chatacterized Hit- tr|D8RVD9|D8RVD9_SELML
Putative uncharacterized protein OS=Selaginella
moelle,35.06,0.00000000000003,ZF_RING_2,Zinc finger, RING-type;
ZF_RING_1,Zinc finger, RING-type, conserved site; no
description,Z,CUFF.16594.1
         (945 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS318285 weakly similar to UniRef100_Q9ZW89 Cluster: F5...   396   e-110
gnl|LJGI|TC63246 weakly similar to UniRef100_A7PAJ4 Cluster: Chr...    72   7e-12

>gnl|LJGI|FS318285 weakly similar to UniRef100_Q9ZW89 Cluster: F5A8.9 protein; n=1;
           Arabidopsis thaliana|Rep: F5A8.9 protein - Arabidopsis
           thaliana (Mouse-ear cress), partial (16%)
          Length = 773

 Score =  396 bits (200), Expect = e-110
 Identities = 230/240 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaaaaagtgcgaggagacaagtttgcattcatctagacggttaaagaaggtaaaaaga 60
           |||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 534 atgaaaaagtacgaggagacaagtttgcactcatctagacggctaaagaaggtaaaaaga 593

                                                                       
Query: 61  aatatttcctgtgataatgaagttagtactgcggctggaccttctcgcaaggaaagaaag 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 594 aatatttcctgtgataatgaagttagtactgcagctggaccttctcgcaaggaaaaaaag 653

                                                                       
Query: 121 tttgtgaaaaaggttgttaatgaaatggtgtcagatcctgtgattttggatttaagccca 180
           |||||||||||||||||| ||||| ||||||| |||||||| ||||||||||||||||||
Sbjct: 654 tttgtgaaaaaggttgttgatgaagtggtgtcggatcctgtaattttggatttaagccca 713

                                                                       
Query: 181 gatgaccggctttgcagaagggatagagatagattacacactgaagctgcagctacctct 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 gatgaccggctttgcagaatggatagagatagattacacactgaagctgcagctacctct 773


>gnl|LJGI|TC63246 weakly similar to UniRef100_A7PAJ4 Cluster: Chromosome chr14
           scaffold_9, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr14 scaffold_9, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (59%)
          Length = 1334

 Score = 71.9 bits (36), Expect = 7e-12
 Identities = 87/104 (83%)
 Strand = Plus / Plus

                                                                       
Query: 656 ttgagcatccagccacagctgataaaaaattaaactcccagacagtcccatgtgacaatt 715
           |||||||| |||||||  ||||| |||| |||  ||||| |||| |||||||| ||||||
Sbjct: 816 ttgagcatgcagccaccactgatcaaaagttatgctccctgacaatcccatgttacaatt 875

                                                       
Query: 716 tggcctcagttacttatatccccatggatcaagaattaccagat 759
           ||||||||| |||||   |||| ||||||||||| || ||||||
Sbjct: 876 tggcctcaggtactttggtccctatggatcaagagttgccagat 919