Miyakogusa Predicted Gene

Lj0g3v0252439.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0252439.1 tr|G7I9G8|G7I9G8_MEDTR U4/U6.U5
tri-snRNP-associated protein OS=Medicago truncatula GN=MTR_1g083910
,69.67,0,seg,NULL; SUBFAMILY NOT NAMED,NULL; SQUAMOUS CELL CARCINOMA
ANTIGEN RECOGNISED BY CYTOTOXIC T LYMPHO,CUFF.16559.1
         (2655 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP064790 similar to UniRef100_A7QV24 Cluster: Chromosom...   460   e-128
gnl|LJGI|TC74063                                                       60   7e-08

>gnl|LJGI|BP064790 similar to UniRef100_A7QV24 Cluster: Chromosome undetermined
            scaffold_184, whole genome shotgun sequence; n=1; Vitis
            vinifera|Rep: Chromosome undetermined scaffold_184, whole
            genome shotgun sequence - Vitis vinifera (Grape), partial
            (12%)
          Length = 529

 Score =  460 bits (232), Expect = e-128
 Identities = 237/239 (99%)
 Strand = Plus / Minus

                                                                        
Query: 2417 tgtctgtggagagaatgagggaagctcaagttcgttcgaagacaccctatattgttctta 2476
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529  tgtctgtggagagaatgagggaagctcaagttcgttcgaagacaccctatattgttctta 470

                                                                        
Query: 2477 gtggtaatgtcaaaccaggacaaactagtgacccaaaaagtggttttgctactgttgaga 2536
            ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 469  gtggtaatgtcaaaccaggacnaactagtgaccccaaaagtggttttgctactgttgaga 410

                                                                        
Query: 2537 aggatcttcctggaggcttgacacccatgcttggtgatcgaaaggttgagcactttctgg 2596
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409  aggatcttcctggaggcttgacacccatgcttggtgatcgaaaggttgagcactttctgg 350

                                                                       
Query: 2597 gaattaagaggaaagctgaaccatcgagcgctaataccccaaaaaaggctaaatcttga 2655
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349  gaattaagaggaaagctgaaccatcgagcgctaataccccaaaaaaggctaaatcttga 291


>gnl|LJGI|TC74063 
          Length = 666

 Score = 60.0 bits (30), Expect = 7e-08
 Identities = 67/78 (85%), Gaps = 1/78 (1%)
 Strand = Plus / Minus

                                                                        
Query: 2576 gaaaggttgagcactttctgggaattaagaggaaagctgaaccatcgagcgctaataccc 2635
            |||||||||||||||||||  ||||||| |||||| |||||||| | | | |||||||  
Sbjct: 278  gaaaggttgagcactttctatgaattaataggaaatctgaaccaccaaactctaatacat 219

                              
Query: 2636 caaaaaaggctaaatctt 2653
            | ||||||||||||||||
Sbjct: 218  c-aaaaaggctaaatctt 202