Miyakogusa Predicted Gene
- Lj0g3v0252279.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0252279.2 tr|B9NH20|B9NH20_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_583791 PE=4
SV=1,33.67,8e-19,coiled-coil,NULL; PPR,Pentatricopeptide repeat;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; PPR,CUFF.16544.2
(759 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58745 244 7e-64
gnl|LJGI|TC81373 similar to UniRef100_A7PSR1 Cluster: Chromosome... 188 3e-47
gnl|LJGI|FS330439 weakly similar to UniRef100_A7PSR1 Cluster: Ch... 184 5e-46
gnl|LJGI|BW594341 weakly similar to UniRef100_A7QH77 Cluster: Ch... 184 5e-46
gnl|LJGI|TC81578 weakly similar to UniRef100_Q9LVD3 Cluster: Sal... 109 3e-23
gnl|LJGI|TC64546 weakly similar to UniRef100_A7P9F5 Cluster: Chr... 109 3e-23
gnl|LJGI|TC63385 weakly similar to UniRef100_Q8L7T0 Cluster: AT4... 101 6e-21
gnl|LJGI|BP042555 72 6e-12
gnl|LJGI|AV409767 weakly similar to UniRef100_Q0DEH2 Cluster: Os... 68 9e-11
>gnl|LJGI|TC58745
Length = 782
Score = 244 bits (123), Expect = 7e-64
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 1 atggcttttacgtctgagattggtttgatgttccattggttaaagccagacaaggcttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 atggcttttacgtctgagattggtttgatgttccattggttaaagccagacaaggcttct 551
Query: 61 aaggtttactgtcaaatgattgatagtggggttacgcccaccgttgatacatacaaaacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aaggtttactgtcaaatgattgatagtggggttacgcccaccgttgatacatacaaaacg 611
Query: 121 ctt 123
|||
Sbjct: 612 ctt 614
>gnl|LJGI|TC81373 similar to UniRef100_A7PSR1 Cluster: Chromosome chr8 scaffold_29,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_29, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (4%)
Length = 663
Score = 188 bits (95), Expect = 3e-47
Identities = 304/373 (81%), Gaps = 3/373 (0%)
Strand = Plus / Plus
Query: 264 aagactgtcggaagctttggatctcttccgagagatggtgcgcagcggtgtgttgccaga 323
||||||||||||||||| ||||||||| |||||||| ||||| | ||||||| ||| |
Sbjct: 189 aagactgtcggaagcttatgatctcttcagagagatgctgcgctggggtgtgtccccaaa 248
Query: 324 tgagtatacttattctctcttgatggatacttgtcgtcttacaggtgaattcagtaaggc 383
| | | |||||| || |||||| || ||| |||| | |||| | |||||||||||
Sbjct: 249 taacgaaacttatactggtttgatgaatgcttatcgtatcgaaggtcagttcagtaaggc 308
Query: 384 ttttcatttgcatgatgaaatgatacagaagagttt---gactgattttgttactggttt 440
|||||||||||| |||||||||| ||| ||| |||| | ||| |||||||||||| ||
Sbjct: 309 ttttcatttgcaagatgaaatgacacacaagggttttttgcctggttttgttactgggtt 368
Query: 441 ttcaccgtttgttgttacctacaacgcgcttattcatgggtattgctttttggggaggtt 500
||| |||| | |||||| |||||||| ||||| |||| |||||| ||||| ||
Sbjct: 369 ttcgccgtctcatgttacatacaacgccattatttatggcctttgcttattgggccgggc 428
Query: 501 tgtggaggctatggggattttgaggggcatggctgagatgggtttgccccctgatgctgt 560
|| ||||||| ||||| |||||||||||||| ||||||| || ||| |||||||||||||
Sbjct: 429 tgaggaggctctgggggttttgaggggcatgcctgagatcgggttgtcccctgatgctgt 488
Query: 561 tagttatagcactgttatatcctggtttcaccgaaaccgggagctggggaaggcgtatga 620
||||||| |||||||||||| ||||| ||||| |||||||| ||||||||||||||
Sbjct: 489 tagttattgcactgttatattagggttttgccgaatccgggagccagggaaggcgtatga 548
Query: 621 attgaaggtggag 633
||||||||||||
Sbjct: 549 gttgaaggtggag 561
>gnl|LJGI|FS330439 weakly similar to UniRef100_A7PSR1 Cluster: Chromosome chr8
scaffold_29, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr8 scaffold_29, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (5%)
Length = 742
Score = 184 bits (93), Expect = 5e-46
Identities = 206/243 (84%), Gaps = 3/243 (1%)
Strand = Plus / Plus
Query: 343 ttgatggatacttgtcgtcttacaggtgaattcagtaaggcttttcatttgcatgatgaa 402
|||||| || ||||| ||||| ||||||||||||||||||||||||| ||||| || |
Sbjct: 492 ttgatgcatgcttgttgtcttgaaggtgaattcagtaaggcttttcatatgcatcatcag 551
Query: 403 atgatacagaagagt---ttgactgattttgttactggtttttcaccgtttgttgttacc 459
|||||||| ||| || ||| |||||||||||||||| ||||| ||| | || ||||
Sbjct: 552 atgatacacaagggtgttttgcctgattttgttactgggttttcgccggctctttttaca 611
Query: 460 tacaacgcgcttattcatgggtattgctttttggggaggtttgtggaggctatggggatt 519
||||||||| ||||||| ||| ||||||||| |||||| ||| |||||| ||||||||
Sbjct: 612 tacaacgcgattattcacgggctttgctttttagggagggttgaggaggccctggggatt 671
Query: 520 ttgaggggcatggctgagatgggtttgccccctgatgctgttagttatagcactgttata 579
|||||||||||| |||||||||||||| ||||||| ||||||||||||| | |||||||
Sbjct: 672 ttgaggggcatgcctgagatgggtttgtcccctgacgctgttagttatataattgttata 731
Query: 580 tcc 582
|||
Sbjct: 732 tcc 734
Score = 63.9 bits (32), Expect = 1e-09
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 514 gggattttgaggggcatggctgagatgggtttgccccctgatgctgttagttatag 569
|||||||||||||| |||||||||| |||||| |||||||||| ||||||||||
Sbjct: 231 gggattttgaggggtatggctgagaagggtttatcccctgatgcccttagttatag 286
>gnl|LJGI|BW594341 weakly similar to UniRef100_A7QH77 Cluster: Chromosome chr18
scaffold_96, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr18 scaffold_96, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (4%)
Length = 458
Score = 184 bits (93), Expect = 5e-46
Identities = 267/325 (82%)
Strand = Plus / Plus
Query: 422 ctgattttgttactggtttttcaccgtttgttgttacctacaacgcgcttattcatgggt 481
||||||||||| ||| ||||| || | | ||||||| ||||| || ||||||||||| |
Sbjct: 26 ctgattttgtttctgccttttcgccatctcttgttacatacaatgcacttattcatggct 85
Query: 482 attgctttttggggaggtttgtggaggctatggggattttgaggggcatggctgagatgg 541
|||||||| | |||||| || |||||| |||||||||||||||||||| || ||||||
Sbjct: 86 attgctttctcgggaggcttcaggaggcgctggggattttgaggggcatgcctcagatgg 145
Query: 542 gtttgccccctgatgctgttagttatagcactgttatatcctggtttcaccgaaaccggg 601
| ||| ||||||||| ||||||||||| | ||||||||||| ||| ||||| |||||
Sbjct: 146 gattgtcccctgatggtgttagttataacgctgttatatccgcgttatgccgaatccggg 205
Query: 602 agctggggaaggcgtatgaattgaaggtggagatggatgagaaggatatttggtggttgg 661
||||||||||||| | ||| |||||| | ||||||||||| ||| || | |||||
Sbjct: 206 agctggggaaggcctttgatttgaagtttgagatggatgaaaagagcatcggtccgttgg 265
Query: 662 atgaaaacacgcgtgaatcacttatgaaagacctgtcggatgtggatacttatactagtg 721
||||| |||| ||||||||||||| || |||||||||| |||||||||| |||||
Sbjct: 266 atgaagacaccaatgaatcacttatggaaccactgtcggatgaggatacttattctagtt 325
Query: 722 tgatgaatgattattttgctgaagg 746
|||||||||| ||||||||| ||||
Sbjct: 326 tgatgaatgaatattttgctcaagg 350
>gnl|LJGI|TC81578 weakly similar to UniRef100_Q9LVD3 Cluster: Salt-inducible
protein-like; n=2; Arabidopsis thaliana|Rep:
Salt-inducible protein-like - Arabidopsis thaliana
(Mouse-ear cress), partial (5%)
Length = 669
Score = 109 bits (55), Expect = 3e-23
Identities = 76/83 (91%)
Strand = Plus / Plus
Query: 506 aggctatggggattttgaggggcatggctgagatgggtttgccccctgatgctgttagtt 565
||||| ||||||||||||||| ||||||| ||| ||||||| ||||||||||||||||||
Sbjct: 469 aggctgtggggattttgagggtcatggctaagaggggtttgtcccctgatgctgttagtt 528
Query: 566 atagcactgttatatcctggttt 588
||| ||||||||||||| |||||
Sbjct: 529 ataccactgttatatccgggttt 551
>gnl|LJGI|TC64546 weakly similar to UniRef100_A7P9F5 Cluster: Chromosome chr3
scaffold_8, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr3 scaffold_8, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (19%)
Length = 877
Score = 109 bits (55), Expect = 3e-23
Identities = 79/87 (90%)
Strand = Plus / Plus
Query: 495 gaggtttgtggaggctatggggattttgaggggcatggctgagatgggtttgccccctga 554
|||| ||| ||||||| ||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 563 gagggttgaggaggctgtggggattttgaggggcatggctgagaggggtttgtcccctga 622
Query: 555 tgctgttagttatagcactgttatatc 581
|| ||||||||||| |||| |||||||
Sbjct: 623 tgttgttagttataccactattatatc 649
>gnl|LJGI|TC63385 weakly similar to UniRef100_Q8L7T0 Cluster: AT4g28010/T13J8_120;
n=1; Arabidopsis thaliana|Rep: AT4g28010/T13J8_120 -
Arabidopsis thaliana (Mouse-ear cress), partial (6%)
Length = 1001
Score = 101 bits (51), Expect = 6e-21
Identities = 140/169 (82%), Gaps = 3/169 (1%)
Strand = Plus / Plus
Query: 366 aggtgaattcagtaaggcttttcatttgcatgatgaaatgatacagaagag---tttgac 422
|||||||||||||| |||||||||||||||||||||||||| ||| | | | |||| |
Sbjct: 831 aggtgaattcagtatggcttttcatttgcatgatgaaatgagacacaggggttttttgcc 890
Query: 423 tgattttgttactggtttttcaccgtttgttgttacctacaacgcgcttattcatgggta 482
||||||||||| | |||||||| | | ||||||| | |||||| ||||||||||||
Sbjct: 891 tgattttgttattcagttttcaccatctcttgttacattcaacgcccttattcatgggct 950
Query: 483 ttgctttttggggaggtttgtggaggctatggggattttgaggggcatg 531
||||| ||||| |||| ||| |||||| |||| |||||||| ||||||
Sbjct: 951 ttgctctttggagagggttgacgaggctctgggtattttgagaggcatg 999
Score = 61.9 bits (31), Expect = 5e-09
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 506 aggctatggggattttgaggggcatggctgagatgggtttgccccctgatgctgttagtt 565
||||| |||||||||| || | ||||||||||| ||||||| |||||||| ||||||||
Sbjct: 530 aggctttggggatttttagtgccatggctgagaggggtttgtcccctgatcttgttagtt 589
Query: 566 ata 568
|||
Sbjct: 590 ata 592
>gnl|LJGI|BP042555
Length = 497
Score = 71.9 bits (36), Expect = 6e-12
Identities = 145/179 (81%), Gaps = 2/179 (1%)
Strand = Plus / Plus
Query: 451 gttgttacctacaacgcgcttattcatgggtattgctttttggggaggtttgtggaggct 510
|||| ||| ||||||| ||||||||||||||||||| | | | |||||| |||||||
Sbjct: 275 gttgctacatacaacgagcttattcatgggtattgccgtgtagataggtttaaggaggct 334
Query: 511 atggggattttgaggggcatggctgagatgggtttgccccctgatgctgttagttatagc 570
||||||||||||||| |||||| ||| ||||| | ||||||||| || || |||| |
Sbjct: 335 gtggggattttgagggatatggctaagaggggttngtcccctgatgttgatacttattac 394
Query: 571 actgttatatcctggtttcaccgaaaccggg-agctggggaaggcgtatgaattgaagg 628
|| |||||| | ||||| || |||||||| ||||||| ||||||| |||| ||||||
Sbjct: 395 cctcttatatgcgggttttgcc-aaaccgggaagctgggtaaggcgtttgaaatgaagg 452
>gnl|LJGI|AV409767 weakly similar to UniRef100_Q0DEH2 Cluster: Os06g0152500 protein;
n=1; Oryza sativa Japonica Group|Rep: Os06g0152500
protein - Oryza sativa subsp. japonica (Rice), partial
(6%)
Length = 411
Score = 67.9 bits (34), Expect = 9e-11
Identities = 119/146 (81%), Gaps = 6/146 (4%)
Strand = Plus / Plus
Query: 366 aggtgaattcagtaaggcttttcatttgcatgatgaaatgatacagaagag---tttgac 422
||||||||||||||||| || | ||||||||||| |||||||||| || | |||| |
Sbjct: 269 aggtgaattcagtaaggtttctaatttgcatgatcaaatgatacacaatggtgttttgcc 328
Query: 423 tgattttgttactggtttttcaccgtttgttgttacctacaacgcgcttattcatgggta 482
|||||||||||| || || |||| | ||||||| ||||| || |||||| |||| ||
Sbjct: 329 tgattttgttaccgg---gtcgccgtctcttgttacatacaatgcacttatttatggcta 385
Query: 483 ttgctttttggggaggtttgtggagg 508
|||||||||||| ||| ||| |||||
Sbjct: 386 ttgctttttgggtagggttgaggagg 411
Score = 61.9 bits (31), Expect = 5e-09
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 265 agactgtcggaagctttggatctcttccgagagatggtgcgcagcggtgtgttgccagat 324
|||||| |||||||||| ||||||||||||||||| || | || ||| ||| |||||||
Sbjct: 147 agactgacggaagcttttcatctcttccgagagatgctgtggaggggtttgtcgccagat 206
Query: 325 gagtatacttattct 339
||| ||||||||||
Sbjct: 207 gagggtacttattct 221