Miyakogusa Predicted Gene
- Lj0g3v0251009.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0251009.1 Non Chatacterized Hit- tr|F6HIC2|F6HIC2_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,26.09,1e-18,PPR: pentatricopeptide repeat domain,Pentatricopeptide
repeat; PPR,Pentatricopeptide repeat; PGR3 (P,CUFF.16442.1
(1401 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS336830 weakly similar to UniRef100_A7Q9C2 Cluster: Ch... 565 e-160
gnl|LJGI|BW627355 similar to UniRef100_A7Q9C2 Cluster: Chromosom... 139 5e-32
>gnl|LJGI|FS336830 weakly similar to UniRef100_A7Q9C2 Cluster: Chromosome chr19
scaffold_66, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr19 scaffold_66, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (35%)
Length = 755
Score = 565 bits (285), Expect = e-160
Identities = 396/433 (91%)
Strand = Plus / Plus
Query: 1 atgcttcttcacttgtacgcatcctgtggggaaacaaggcacgcccgcctcatgttcgat 60
||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||
Sbjct: 323 atgcttcttcacttgtatgcgtcctgtggggaaacaagccacgcccgcctcatgtttgat 382
Query: 61 aaaatgccgcaacgggatatcgccacttggaacataatgatcgcccatttgattaacgtg 120
||||||||||||| |||| | |||||||||||||||||||||| ||||||||||| || |
Sbjct: 383 aaaatgccgcaacaggatgttgccacttggaacataatgatcggccatttgattagcgcg 442
Query: 121 ggctacgttggcgctgcccgtgacttgttttcttccatgcctcagaggaacgtgaggtca 180
|| |||| ||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 443 ggtgacgtgggcgctgcccgtgacttgtttgattccatgcctcgaaggaacgtgaggtcg 502
Query: 181 tggacttcggtcatttatgggctcgccaagtgtggaatgtgtgaggaagctctcaaggtg 240
|||||||||||||||| |||||| ||||||||||| |||| |||||||||||| | ||||
Sbjct: 503 tggacttcggtcatttctgggcttgccaagtgtgggatgtctgaggaagctctaagggtg 562
Query: 241 ttctcggagatggaaaaggatggttccaagcctaatgaggtgacggtggtggctgttctc 300
|||||||||||||||| || ||||| | ||||||||||||||| |||||||||||||||
Sbjct: 563 ttctcggagatggaaagagaaggttcgaggcctaatgaggtgaccgtggtggctgttctc 622
Query: 301 gtggcctgtgctcagttgggggacttggagtttggcaagagcgttcaccgcttcgctaaa 360
||||| |||||||||||||||||||||||||||| ||||||| |||| ||||||||| ||
Sbjct: 623 gtggcttgtgctcagttgggggacttggagtttgtcaagagcattcatcgcttcgctgaa 682
Query: 361 ggaaacgggtttctgcggaatgtttatgtttgcaatgctttgattgatatgtatgtcaag 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ggaaatgggtttctgcggaatgtttatgtttgcaatgctttgattgatatgtatgtcaag 742
Query: 421 tgcgggtgtttgg 433
|||||||| ||||
Sbjct: 743 tgcgggtgcttgg 755
>gnl|LJGI|BW627355 similar to UniRef100_A7Q9C2 Cluster: Chromosome chr19 scaffold_66,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_66, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (10%)
Length = 488
Score = 139 bits (70), Expect = 5e-32
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 1 atgcttcttcacttgtacgcatcctgtggggaaacaaggcacgcccgcctcatgttcgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 atgcttcttcacttgtacgcatcctgtggggaaacaaggcacgcccgcctcatgttcgat 478
Query: 61 aaaatgccgc 70
||||||||||
Sbjct: 479 aaaatgccgc 488