Miyakogusa Predicted Gene

Lj0g3v0250599.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0250599.1 tr|B9HBK0|B9HBK0_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_560743 PE=4 SV=1,64.79,7e-17,GB
DEF: T22K18.10 PROTEIN (TAF12) (PUTATIVE TBP-ASSOCIATED 58 KDA SUBUNIT
PROTEIN),NULL; FAMILY NOT ,CUFF.16407.1
         (219 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP034533 similar to UniRef100_A7PPH6 Cluster: Chromosom...   392   e-109
gnl|LJGI|TC79983                                                       86   1e-16

>gnl|LJGI|BP034533 similar to UniRef100_A7PPH6 Cluster: Chromosome chr8 scaffold_23,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr8 scaffold_23, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (17%)
          Length = 548

 Score =  392 bits (198), Expect = e-109
 Identities = 212/219 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgacacttcctggttttggtggtgatgagattaaaagctacaaaagaccggttcaaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 atgacacttcctggttttggtggtgatgagattaaaagctacaaaagaccggttcaaagt 398

                                                                       
Query: 61  gagattcacaaggagcgtctagcggctatnnnnnnntcattgctagcagctgaggcagca 120
           |||||||||||||||||||||||||||||       ||||||||||||||||||||||||
Sbjct: 397 gagattcacaaggagcgtctagcggctataaaaaaatcattgctagcagctgaggcagca 338

                                                                       
Query: 121 catgctaagggctcttttggccaggcatctggtggtgcaaagggtagtcagggaaagcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 catgctaagggctcttttggccaggcatctggtggtgcaaagggtagtcagggaaagcct 278

                                                  
Query: 181 cctttgaatattattggctctcccaaccttaaaaattga 219
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cctttgaatattattggctctcccaaccttaaaaattga 239


>gnl|LJGI|TC79983 
          Length = 396

 Score = 85.7 bits (43), Expect = 1e-16
 Identities = 43/43 (100%)
 Strand = Plus / Plus

                                                      
Query: 177 gcctcctttgaatattattggctctcccaaccttaaaaattga 219
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gcctcctttgaatattattggctctcccaaccttaaaaattga 43