Miyakogusa Predicted Gene
- Lj0g3v0250239.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0250239.1 tr|B9N9A7|B9N9A7_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_586590 PE=4
SV=1,84.85,0,ATP-DEPENDENT RNA HELICASE,NULL;
DEAH_ATP_HELICASE,DNA/RNA helicase, ATP-dependent, DEAH-box type,
c,CUFF.16378.1
(3654 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BP043289 UniRef100_A7Q9V8 Cluster: Chromosome chr8 scaf... 942 0.0
gnl|LJGI|BW626606 homologue to UniRef100_A7Q9V8 Cluster: Chromos... 928 0.0
gnl|LJGI|TC71320 UniRef100_A7Q9V8 Cluster: Chromosome chr8 scaff... 799 0.0
gnl|LJGI|BP075863 homologue to UniRef100_A7Q9V8 Cluster: Chromos... 232 1e-59
gnl|LJGI|TC82523 similar to UniRef100_Q2HTS9 Cluster: DNA-bindin... 174 3e-42
>gnl|LJGI|BP043289 UniRef100_A7Q9V8 Cluster: Chromosome chr8 scaffold_68, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr8 scaffold_68, whole genome shotgun sequence - Vitis
vinifera (Grape), partial (24%)
Length = 520
Score = 942 bits (475), Expect = 0.0
Identities = 494/498 (99%), Gaps = 2/498 (0%)
Strand = Plus / Minus
Query: 3157 gctaagaatttttctgggccatggtgttttgagaatttcgttcaatctcgatccttgaga 3216
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 520 gctaagaatttttctggcccatggtgttttgagaatttcgttcaatctcgatcnttgaga 461
Query: 3217 agagcacaggatgttaggaaacagcttcttaccatcatggataagtacaagttggatgtt 3276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 agagcacaggatgttaggaaacagcttcttaccatcatggataagtacaagttggatgtt 401
Query: 3277 gtaagtgctggaaaaaacttcacgaagatcaggaaggctatcactgcaggtttcttcttt 3336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gtaagtgctggaaaaaacttcacgaagatcaggaaggctatcactgcaggtttcttcttt 341
Query: 3337 catgcagctaggaaggaccctcaagaaggttacagaactctagttgagaatcagcctgtt 3396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 catgcagctaggaaggaccctcaagaaggttacagaactctagttgagaatcagcctgtt 281
Query: 3397 tatatccatccaagctcagctttgttccagagacagccagattgggtcatataccatgaa 3456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tatatccatccaagctcagctttgttccagagacagccagattgggtcatataccatgaa 221
Query: 3457 cttgtgatgactactaaggaatatatgcgtgaggtcaccgtcatagaccccaaatggctt 3516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 cttgtgatgactactaaggaatatatgcgtgaggtcaccgtcatagaccccaaatggctt 161
Query: 3517 gttgaattggctccaaggttcttcaaagtggctgatcctacaaagatgagcaagcgaaag 3576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 gttgaattggctccaaggttcttcaaagtggctgatcctacaaagatgagcaagcgaaag 101
Query: 3577 cgtcaagagcgtatagaaccactttatgatagatatcacgaaccaaactcgtggcgtttg 3636
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 100 cgtcaagagcgtatagaaccactttatgatagatatcacgaacc-aactcgtggcgtttg 42
Query: 3637 agcaagcgccgcgcatga 3654
||| ||||||||||||||
Sbjct: 41 agc-agcgccgcgcatga 25
>gnl|LJGI|BW626606 homologue to UniRef100_A7Q9V8 Cluster: Chromosome chr8 scaffold_68,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_68, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (23%)
Length = 476
Score = 928 bits (468), Expect = 0.0
Identities = 474/476 (99%)
Strand = Plus / Plus
Query: 2081 atgttctttttggactcctgaagcagctagtgaagcgtagacctgaattgcgattgattg 2140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgttctttttggactcctgaagcagctagtgaagcgtagacctgaattgcgattgattg 60
Query: 2141 tcacatctgctactctggatgctgagaagttttcaggatatttctataactgtaacatct 2200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcacatctgctactctggatgctgagaagttttcaggatatttctataactgtaacatct 120
Query: 2201 tcagaattcctgggagaacttttcctgtggaggtactttatactaaacagccagaaagtg 2260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcagaattcctgggagaacttttcctgtggaggtactttatactaaacagccagaaagtg 180
Query: 2261 attacctagatgcatctttaatcactgttctacagatccacttgacagaacctgaagggg 2320
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 181 attacctagatgcatctttaatcactgatctacagatccacttgacagaacctgaagggg 240
Query: 2321 acattcttctatttttgactggtcaagaggagattgattttgcttgtcagtctctctatg 2380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acattcttctatttttgactggtcaagaggagattgattttgcttgtcagtctctctatg 300
Query: 2381 agagaatgaaggggttaggtaagaatgtaccagagctgattattttgcctgtttatagtg 2440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agagaatgaaggggttaggtaagaatgtaccagagctgattattttgcctgtttatagtg 360
Query: 2441 cccttcctagtgaaatgcaatctaggatttttgatcctgctcctcctgggaaaaggaaag 2500
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 361 cccttcctagtgaaatgcaatctaggatatttgatcctgctcctcctgggaaaaggaaag 420
Query: 2501 tagtagtggctactaacattgctgaggcttccttgactattgatggaatattttat 2556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tagtagtggctactaacattgctgaggcttccttgactattgatggaatattttat 476
>gnl|LJGI|TC71320 UniRef100_A7Q9V8 Cluster: Chromosome chr8 scaffold_68, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr8 scaffold_68, whole genome shotgun sequence - Vitis
vinifera (Grape), partial (19%)
Length = 517
Score = 799 bits (403), Expect = 0.0
Identities = 403/403 (100%)
Strand = Plus / Plus
Query: 3252 catggataagtacaagttggatgttgtaagtgctggaaaaaacttcacgaagatcaggaa 3311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 catggataagtacaagttggatgttgtaagtgctggaaaaaacttcacgaagatcaggaa 61
Query: 3312 ggctatcactgcaggtttcttctttcatgcagctaggaaggaccctcaagaaggttacag 3371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ggctatcactgcaggtttcttctttcatgcagctaggaaggaccctcaagaaggttacag 121
Query: 3372 aactctagttgagaatcagcctgtttatatccatccaagctcagctttgttccagagaca 3431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 aactctagttgagaatcagcctgtttatatccatccaagctcagctttgttccagagaca 181
Query: 3432 gccagattgggtcatataccatgaacttgtgatgactactaaggaatatatgcgtgaggt 3491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gccagattgggtcatataccatgaacttgtgatgactactaaggaatatatgcgtgaggt 241
Query: 3492 caccgtcatagaccccaaatggcttgttgaattggctccaaggttcttcaaagtggctga 3551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 caccgtcatagaccccaaatggcttgttgaattggctccaaggttcttcaaagtggctga 301
Query: 3552 tcctacaaagatgagcaagcgaaagcgtcaagagcgtatagaaccactttatgatagata 3611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tcctacaaagatgagcaagcgaaagcgtcaagagcgtatagaaccactttatgatagata 361
Query: 3612 tcacgaaccaaactcgtggcgtttgagcaagcgccgcgcatga 3654
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tcacgaaccaaactcgtggcgtttgagcaagcgccgcgcatga 404
>gnl|LJGI|BP075863 homologue to UniRef100_A7Q9V8 Cluster: Chromosome chr8 scaffold_68,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_68, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (7%)
Length = 408
Score = 232 bits (117), Expect = 1e-59
Identities = 154/165 (93%), Gaps = 1/165 (0%)
Strand = Plus / Minus
Query: 3487 gaggtcaccgtcatagaccccaaatggcttgttgaattggctccaaggttcttcaaagtg 3546
||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||
Sbjct: 408 gaggtcaccgtcatagacccccatcggcttgttgaattggctcccaggttcttcaaagtg 349
Query: 3547 gctgatcctacaaagatgagcaagcgaaagcgtcaagagcgtatagaaccactttatgat 3606
||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 348 gctgatcctaccaagatgagcaagcgaaagcgtccagagcgtatagaaccactctatgat 289
Query: 3607 agatatcacgaaccaaact-cgtggcgtttgagcaagcgccgcgc 3650
|||||||||||||| |||| |||||||||||||| ||| ||||||
Sbjct: 288 agatatcacgaacccaactccgtggcgtttgagccagccccgcgc 244
>gnl|LJGI|TC82523 similar to UniRef100_Q2HTS9 Cluster: DNA-binding WRKY; VQ; n=1;
Medicago truncatula|Rep: DNA-binding WRKY; VQ - Medicago
truncatula (Barrel medic), partial (34%)
Length = 760
Score = 174 bits (88), Expect = 3e-42
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 609 caggtatgataggcgtaggagagatgggtatgaagaggatgagcgtggaagggaggatga 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 caggtatgataggcgtaggagagatgggtatgaagaggatgagcgtggaagggaggatga 127
Query: 669 tgaagggagaggtcggagggattcaaga 696
||||||||||||||||||||||||||||
Sbjct: 128 tgaagggagaggtcggagggattcaaga 155