Miyakogusa Predicted Gene

Lj0g3v0248929.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0248929.1 Non Chatacterized Hit- tr|B9RSM2|B9RSM2_RICCO
Ubiquitin-protein ligase, putative OS=Ricinus communis,34.71,2e-16,
,CUFF.16262.1
         (381 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP075118 similar to UniRef100_A7PAL1 Cluster: Chromosom...   285   1e-76
gnl|LJGI|DC594957                                                     206   7e-53
gnl|LJGI|TC64870 weakly similar to UniRef100_A7PAL1 Cluster: Chr...    60   1e-08
gnl|LJGI|TC74411 weakly similar to UniRef100_A7PAM4 Cluster: Chr...    58   4e-08

>gnl|LJGI|BP075118 similar to UniRef100_A7PAL1 Cluster: Chromosome chr14 scaffold_9,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr14 scaffold_9, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (5%)
          Length = 341

 Score =  285 bits (144), Expect = 1e-76
 Identities = 170/176 (96%), Gaps = 2/176 (1%)
 Strand = Plus / Minus

                                                                       
Query: 205 tctcctcttgtgcttaaggattt-ccctgtagaaatgc-tcaatgaaggcctctctgggt 262
           |||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 341 tctcctcttgtgctcaaggatttaccctgtagaaatgcatcaatgaaggcctctctgggt 282

                                                                       
Query: 263 attgtcacttgagtttgtgtgacaagcttagactcctgactttcatctgtgatgaagttc 322
           ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 281 attgtaacttgagtttgtgtgacaagcttagactcctaactttcatctgtgatgaagttc 222

                                                                   
Query: 323 ttagctcagagaaagtgaggagtcatattgaaaaggaaaatttaaatattgagaag 378
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ttaactcagagaaagtgaggagtcatattgaaaaggaaaatttaaatattgagaag 166


>gnl|LJGI|DC594957 
          Length = 507

 Score =  206 bits (104), Expect = 7e-53
 Identities = 122/128 (95%)
 Strand = Plus / Plus

                                                                       
Query: 5   aggaaggggaagtagagactattttgcgagaactagttcgcaaacaaaacttgcgcagtg 64
           |||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 145 aggaaggggaagcaaagactattttgcgagaactagatcgcaaacaaaacttgcgcagtg 204

                                                                       
Query: 65  gagagaacaccttagctgttgagttccagactagacttttgaccctgctccgcaccgctt 124
           ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| 
Sbjct: 205 gagagaacaccctagctgttgagttccaaactagacttttgaccctgctccgcaccgctg 264

                   
Query: 125 caggacat 132
           ||||||||
Sbjct: 265 caggacat 272



 Score =  153 bits (77), Expect = 9e-37
 Identities = 119/133 (89%)
 Strand = Plus / Plus

                                                                       
Query: 135 gtctccatccttaactacaatagatgggaactgttcatggttgaatgctctgggggattt 194
           ||||||||||||| |||||  ||||||||||| ||| |||||||| ||||| ||||||||
Sbjct: 372 gtctccatccttagctacagcagatgggaacttttcctggttgaaagctctaggggattt 431

                                                                       
Query: 195 aactttacaatctcctcttgtgcttaaggatttccctgtagaaatgctcaatgaaggcct 254
           | ||||||||||||||||| | || ||||||||||| ||| |||||||||||||||| ||
Sbjct: 432 agctttacaatctcctcttcttctcaaggatttccccgtaaaaatgctcaatgaagggct 491

                        
Query: 255 ctctgggtattgt 267
           |||||||||||||
Sbjct: 492 ctctgggtattgt 504


>gnl|LJGI|TC64870 weakly similar to UniRef100_A7PAL1 Cluster: Chromosome chr14
           scaffold_9, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr14 scaffold_9, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (9%)
          Length = 713

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 46/50 (92%), Gaps = 1/50 (2%)
 Strand = Plus / Plus

                                                             
Query: 329 cagagaaagtgaggagtcatattgaaaaggaaaatttaaatattgagaag 378
           ||||||||||||||||| | |||||||||||||||| ||| |||||||||
Sbjct: 1   cagagaaagtgaggagttacattgaaaaggaaaattcaaa-attgagaag 49


>gnl|LJGI|TC74411 weakly similar to UniRef100_A7PAM4 Cluster: Chromosome chr14
           scaffold_9, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr14 scaffold_9, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (9%)
          Length = 492

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 1   atggaggaaggggaagtagagactattttgcga 33
           |||||||||||||||| ||||||||||||||||
Sbjct: 460 atggaggaaggggaagcagagactattttgcga 492