Miyakogusa Predicted Gene

Lj0g3v0244519.1
Show Alignment: 

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0244519.1 Non Chatacterized Hit- tr|I1ND38|I1ND38_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,30.81,5e-19,PPR_2,Pentatricopeptide repeat; PPR,Pentatricopeptide
repeat; coiled-coil,NULL; SUBFAMILY NOT NAMED,,CUFF.15975.1
         (693 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC81578 weakly similar to UniRef100_Q9LVD3 Cluster: Sal...  1199   0.0  
gnl|LJGI|TC64546 weakly similar to UniRef100_A7P9F5 Cluster: Chr...   163   2e-39
gnl|LJGI|FS330439 weakly similar to UniRef100_A7PSR1 Cluster: Ch...    96   3e-19
gnl|LJGI|FS338098 weakly similar to UniRef100_A7Q333 Cluster: Ch...    90   2e-17
gnl|LJGI|TC63385 weakly similar to UniRef100_Q8L7T0 Cluster: AT4...    88   9e-17
gnl|LJGI|BP042555                                                      84   1e-15
gnl|LJGI|BW594341 weakly similar to UniRef100_A7QH77 Cluster: Ch...    80   2e-14
gnl|LJGI|TC81373 similar to UniRef100_A7PSR1 Cluster: Chromosome...    76   3e-13
gnl|LJGI|BW605216 similar to UniRef100_A7Q333 Cluster: Chromosom...    74   1e-12
gnl|LJGI|TC58745                                                       64   1e-09
gnl|LJGI|FS341697 similar to UniRef100_A0H255 Cluster: Response ...    60   2e-08
gnl|LJGI|FS328368 weakly similar to UniRef100_Q9FIX3 Cluster: Gb...    54   1e-06

>gnl|LJGI|TC81578 weakly similar to UniRef100_Q9LVD3 Cluster: Salt-inducible
           protein-like; n=2; Arabidopsis thaliana|Rep:
           Salt-inducible protein-like - Arabidopsis thaliana
           (Mouse-ear cress), partial (5%)
          Length = 669

 Score = 1199 bits (605), Expect = 0.0
 Identities = 627/632 (99%), Gaps = 3/632 (0%)
 Strand = Plus / Plus

                                                                       
Query: 38  cctttcgccagatcttccgaaatggcatgtcgccg--ccgagcgttaacatttacaactt 95
           ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||
Sbjct: 1   cctttcgccagatcttccgaaatggcatgtcgcccgcccgagcgttaacatttacaactt 60

                                                                       
Query: 96  cagg-atccgcggcttcgccggcgctggaaactttgaatcagaatcggcattgatagtgg 154
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cagggatccgcggcttcgccggcgctggaaactttgaatcagaatcggcattgatagtgg 120

                                                                       
Query: 155 cgagatgcaaggagaagaaggtgcgggaagcgtttgggttgtggaaagccatgactgaca 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cgagatgcaaggagaagaaggtgcgggaagcgtttgggttgtggaaagccatgactgaca 180

                                                                       
Query: 215 agggtgtggagccaaatttggtttcgtccaatgcggttattcaggggttgtgcgaagaag 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agggtgtggagccaaatttggtttcgtccaatgcggttattcaggggttgtgcgaagaag 240

                                                                       
Query: 275 aacggatagaagaggctgaggaggtggttgaggagatgaatcggaagggtttgacccctg 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aacggatagaagaggctgaggaggtggttgaggagatgaatcggaagggtttgacccctg 300

                                                                       
Query: 335 atgagaacacttacatgtctctgtttcagctgctctgcgaccggtgcgaagcagataagg 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atgagaacacttacatgtctctgtttcagctgctctgcgaccggtgcgaagcagataagg 360

                                                                       
Query: 395 cttataaggttttgagtgaaatgattgttagaggtttgtcaccatctgtcgttatataca 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cttataaggttttgagtgaaatgattgttagaggtttgtcaccatctgtcgttatataca 420

                                                                       
Query: 455 acaagcttgttagtgcatattgcgtcggggagagagagagggttgagaaggctgtgggga 514
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 acaagcttgttagtgcatgttgcgtcggggagagagagagggttgagaaggctgtgggga 480

                                                                       
Query: 515 ttttgagggtcatggctaagaggggtttgtcccctgatgctgttagttataccactgtta 574
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttttgagggtcatggctaagaggggtttgtcccctgatgctgttagttataccactgtta 540

                                                                       
Query: 575 tatccgggttttgttatcttgacgagccggagctgcagtggcggagcttgcaagggactg 634
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tatccgggttttgttatcttgacgagccggagctgcagtggcggagcttgcaagggactg 600

                                           
Query: 635 ggagagggctcggccctcctattgttttgaaa 666
           ||||||||||||||||||||||||||||||||
Sbjct: 601 ggagagggctcggccctcctattgttttgaaa 632


>gnl|LJGI|TC64546 weakly similar to UniRef100_A7P9F5 Cluster: Chromosome chr3
           scaffold_8, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr3 scaffold_8, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (19%)
          Length = 877

 Score =  163 bits (82), Expect = 2e-39
 Identities = 282/346 (81%), Gaps = 2/346 (0%)
 Strand = Plus / Plus

                                                                       
Query: 243 caatgcggttattcaggggttgtgcgaagaagaacggatagaagaggctgaggaggtggt 302
           ||||||| |||||||||||||||||   ||||   | |||  |||||| ||| || || |
Sbjct: 314 caatgcgattattcaggggttgtgcagggaaggtagcataatagaggcagagaagatgct 373

                                                                       
Query: 303 tgaggagatgaatcggaagggtttgacccctgatgagaacacttacatgtctctgtttca 362
           ||||||||||||||||||||||||| ||||||||||||  ||||||| ||||||  ||||
Sbjct: 374 tgaggagatgaatcggaagggtttggcccctgatgagaggacttacacgtctctcattca 433

                                                                       
Query: 363 gctgctctgcgaccggtgcgaagca-gataaggcttataaggttttgagtgaaatgattg 421
             || ||||||||  ||| | || | | ||||||| || ||||||||| |||||||||| 
Sbjct: 434 tttgttctgcgacaagtg-gcagaacgttaaggctcatgaggttttgaatgaaatgattc 492

                                                                       
Query: 422 ttagaggtttgtcaccatctgtcgttatatacaacaagcttgttagtgcatattgcgtcg 481
           || | || || || || ||  | | || ||||||| | ||| ||  || |||||||   |
Sbjct: 493 ttcgtgggttttcgccctcgattgctacatacaacgaccttctttatgtatattgccgtg 552

                                                                       
Query: 482 gggagagagagagggttgagaaggctgtggggattttgagggtcatggctaagaggggtt 541
           ||| | ||  |||||||||| ||||||||||||||||||||| ||||||| |||||||||
Sbjct: 553 gggggggaacgagggttgaggaggctgtggggattttgaggggcatggctgagaggggtt 612

                                                         
Query: 542 tgtcccctgatgctgttagttataccactgttatatccgggttttg 587
           |||||||||||| |||||||||||||||| ||||||| ||||||||
Sbjct: 613 tgtcccctgatgttgttagttataccactattatatctgggttttg 658



 Score = 63.9 bits (32), Expect = 1e-09
 Identities = 79/94 (84%), Gaps = 3/94 (3%)
 Strand = Plus / Plus

                                                                       
Query: 53  tccgaaatggcatgtcgccgccgagcgttaacatttacaacttcaggatccgcggctt-- 110
           ||||||| ||| |||||||||||| ||| |||  ||||||| ||| ||||||||||||  
Sbjct: 160 tccgaaacggcgtgtcgccgccgaacgtaaacgcttacaacgtcatgatccgcggcttcg 219

                                             
Query: 111 -cgccggcgctggaaactttgaatcagaatcggc 143
            ||||| |||||  ||||| ||||||||||||||
Sbjct: 220 ccgccgccgctgtgaacttagaatcagaatcggc 253


>gnl|LJGI|FS330439 weakly similar to UniRef100_A7PSR1 Cluster: Chromosome chr8
           scaffold_29, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr8 scaffold_29, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (5%)
          Length = 742

 Score = 95.6 bits (48), Expect = 3e-19
 Identities = 84/96 (87%)
 Strand = Plus / Plus

                                                                       
Query: 492 gagggttgagaaggctgtggggattttgagggtcatggctaagaggggtttgtcccctga 551
           |||||||||| ||||  ||||||||||||||| |||| || ||| |||||||||||||||
Sbjct: 647 gagggttgaggaggccctggggattttgaggggcatgcctgagatgggtttgtcccctga 706

                                               
Query: 552 tgctgttagttataccactgttatatccgggttttg 587
            |||||||||||||  | |||||||||||| |||||
Sbjct: 707 cgctgttagttatataattgttatatccggtttttg 742



 Score = 77.8 bits (39), Expect = 8e-14
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                       
Query: 491 agagggttgagaaggctgtggggattttgagggtcatggctaagaggggtttgtcccctg 550
           ||||||||||||||| ||| |||||||||||||  |||||| ||| |||||| |||||||
Sbjct: 211 agagggttgagaagggtgttgggattttgaggggtatggctgagaagggtttatcccctg 270

                          
Query: 551 atgctgttagttata 565
           ||||  |||||||||
Sbjct: 271 atgcccttagttata 285



 Score = 58.0 bits (29), Expect = 8e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 15  ttcatccaccgccaccctgaaaacctttcgcca 47
           ||||| |||||||||||||||||||||||||||
Sbjct: 68  ttcattcaccgccaccctgaaaacctttcgcca 100


>gnl|LJGI|FS338098 weakly similar to UniRef100_A7Q333 Cluster: Chromosome chr12
           scaffold_47, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr12 scaffold_47, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (3%)
          Length = 792

 Score = 89.7 bits (45), Expect = 2e-17
 Identities = 111/133 (83%)
 Strand = Plus / Plus

                                                                       
Query: 224 agccaaatttggtttcgtccaatgcggttattcaggggttgtgcgaagaagaacggatag 283
           ||||||||| |||||| | |||||| | ||||||| | || ||||  ||||   ||||| 
Sbjct: 186 agccaaattcggtttctttcaatgcagctattcagagattctgcgcggaagggaggataa 245

                                                                       
Query: 284 aagaggctgaggaggtggttgaggagatgaatcggaagggtttgacccctgatgagaaca 343
            ||||||||| |||||| || ||||||||||||||||||||||| ||||||||||||  |
Sbjct: 246 cagaggctgaagaggtgcttcaggagatgaatcggaagggtttggcccctgatgagacta 305

                        
Query: 344 cttacatgtctct 356
           |||||| ||||||
Sbjct: 306 cttacacgtctct 318



 Score = 69.9 bits (35), Expect = 2e-11
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                      
Query: 299 tggttgaggagatgaatcggaagggtttgacccctgatgagaacacttacatgtctctg 357
           |||||||||||||| |||||| ||||||| ||||| |||||| |||||||| |||||||
Sbjct: 573 tggttgaggagatgcatcggaggggtttggcccctcatgagaccacttacaagtctctg 631



 Score = 63.9 bits (32), Expect = 1e-09
 Identities = 71/84 (84%)
 Strand = Plus / Plus

                                                                       
Query: 394 gcttataaggttttgagtgaaatgattgttagaggtttgtcaccatctgtcgttatatac 453
           ||||||||| |||||||| ||||||||| ||| || || ||||| || || | |||||||
Sbjct: 668 gcttataagcttttgagtcaaatgattgctagtggcttttcaccctcggttgctatatac 727

                                   
Query: 454 aacaagcttgttagtgcatattgc 477
           ||| | |||||| |||||||||||
Sbjct: 728 aaccaccttgttcgtgcatattgc 751



 Score = 60.0 bits (30), Expect = 2e-08
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 99  gatccgcggcttcgccggcgctggaaactt 128
           ||||||||||||||||||||||||||||||
Sbjct: 97  gatccgcggcttcgccggcgctggaaactt 126


>gnl|LJGI|TC63385 weakly similar to UniRef100_Q8L7T0 Cluster: AT4g28010/T13J8_120;
           n=1; Arabidopsis thaliana|Rep: AT4g28010/T13J8_120 -
           Arabidopsis thaliana (Mouse-ear cress), partial (6%)
          Length = 1001

 Score = 87.7 bits (44), Expect = 9e-17
 Identities = 98/116 (84%)
 Strand = Plus / Plus

                                                                       
Query: 221 tggagccaaatttggtttcgtccaatgcggttattcaggggttgtgcgaagaagaacgga 280
           |||||||| |||||||||||| ||| |  |||||| |||  ||||| ||  ||||  |||
Sbjct: 152 tggagccatatttggtttcgttcaaaggcgttattaaggaattgtgtgagaaagagagga 211

                                                                   
Query: 281 tagaagaggctgaggaggtggttgaggagatgaatcggaagggtttgacccctgat 336
           | ||||||||| |||||||||||  |||||||||||||||||||||| ||||||||
Sbjct: 212 tggaagaggctaaggaggtggttagggagatgaatcggaagggtttggcccctgat 267



 Score = 87.7 bits (44), Expect = 9e-17
 Identities = 68/76 (89%)
 Strand = Plus / Plus

                                                                       
Query: 490 gagagggttgagaaggctgtggggattttgagggtcatggctaagaggggtttgtcccct 549
           |||||||||||| ||||| |||||||||| || | ||||||| |||||||||||||||||
Sbjct: 517 gagagggttgagcaggctttggggatttttagtgccatggctgagaggggtttgtcccct 576

                           
Query: 550 gatgctgttagttata 565
           |||  |||||||||||
Sbjct: 577 gatcttgttagttata 592



 Score = 52.0 bits (26), Expect = 5e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 388 gataaggcttataaggttttgagtgaaatgattg 421
           |||||||||||||||||||| | |||||||||||
Sbjct: 421 gataaggcttataaggttttcaatgaaatgattg 454


>gnl|LJGI|BP042555 
          Length = 497

 Score = 83.8 bits (42), Expect = 1e-15
 Identities = 74/85 (87%)
 Strand = Plus / Plus

                                                                       
Query: 503 aggctgtggggattttgagggtcatggctaagaggggtttgtcccctgatgctgttagtt 562
           |||||||||||||||||||||  |||||||||||||||| ||||||||||| || || ||
Sbjct: 330 aggctgtggggattttgagggatatggctaagaggggttngtcccctgatgttgatactt 389

                                    
Query: 563 ataccactgttatatccgggttttg 587
           ||  | || |||||| |||||||||
Sbjct: 390 attaccctcttatatgcgggttttg 414


>gnl|LJGI|BW594341 weakly similar to UniRef100_A7QH77 Cluster: Chromosome chr18
           scaffold_96, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr18 scaffold_96, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (4%)
          Length = 458

 Score = 79.8 bits (40), Expect = 2e-14
 Identities = 64/72 (88%)
 Strand = Plus / Plus

                                                                       
Query: 509 tggggattttgagggtcatggctaagaggggtttgtcccctgatgctgttagttatacca 568
           ||||||||||||||| |||| || ||| ||| ||||||||||||| ||||||||||| | 
Sbjct: 116 tggggattttgaggggcatgcctcagatgggattgtcccctgatggtgttagttataacg 175

                       
Query: 569 ctgttatatccg 580
           ||||||||||||
Sbjct: 176 ctgttatatccg 187


>gnl|LJGI|TC81373 similar to UniRef100_A7PSR1 Cluster: Chromosome chr8 scaffold_29,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr8 scaffold_29, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (4%)
          Length = 663

 Score = 75.8 bits (38), Expect = 3e-13
 Identities = 77/90 (85%)
 Strand = Plus / Plus

                                                                       
Query: 498 tgagaaggctgtggggattttgagggtcatggctaagaggggtttgtcccctgatgctgt 557
           |||| ||||| ||||| ||||||||| |||| || |||  || |||||||||||||||||
Sbjct: 429 tgaggaggctctgggggttttgaggggcatgcctgagatcgggttgtcccctgatgctgt 488

                                         
Query: 558 tagttataccactgttatatccgggttttg 587
           |||||||  |||||||||||  ||||||||
Sbjct: 489 tagttattgcactgttatattagggttttg 518


>gnl|LJGI|BW605216 similar to UniRef100_A7Q333 Cluster: Chromosome chr12 scaffold_47,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr12 scaffold_47, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (3%)
          Length = 482

 Score = 73.8 bits (37), Expect = 1e-12
 Identities = 64/73 (87%)
 Strand = Plus / Plus

                                                                       
Query: 284 aagaggctgaggaggtggttgaggagatgaatcggaagggtttgacccctgatgagaaca 343
           |||||||||||| | || |||||||||||| ||||||||||||| | ||||||||||  |
Sbjct: 266 aagaggctgaggcgatgcttgaggagatgagtcggaagggtttggctcctgatgagagga 325

                        
Query: 344 cttacatgtctct 356
           |||||| ||||||
Sbjct: 326 cttacacgtctct 338


>gnl|LJGI|TC58745 
          Length = 782

 Score = 63.9 bits (32), Expect = 1e-09
 Identities = 97/118 (82%), Gaps = 3/118 (2%)
 Strand = Plus / Plus

                                                                       
Query: 14  tttcatccaccgccaccctgaaaacctttcgccagatcttccgaaatggcatgtcgccgc 73
           |||||| |||||||||||| |||||||||||||| ||  ||||| | ||| |||||||||
Sbjct: 295 tttcattcaccgccaccctcaaaacctttcgccacatggtccgatacggcgtgtcgccgc 354

                                                                     
Query: 74  cgagcgttaacattt---acaacttcaggatccgcggcttcgccggcgctggaaactt 128
           |||  || |||  ||   ||||| ||| ||||||||||||| ||| |||||| |||||
Sbjct: 355 cgaaggtcaacggttacaacaacgtcatgatccgcggcttctccgccgctgggaactt 412


>gnl|LJGI|FS341697 similar to UniRef100_A0H255 Cluster: Response regulator receiver;
           n=1; Chloroflexus aggregans DSM 9485|Rep: Response
           regulator receiver - Chloroflexus aggregans DSM 9485,
           partial (11%)
          Length = 805

 Score = 60.0 bits (30), Expect = 2e-08
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                         
Query: 278 ggatagaagaggctgaggaggtggttgaggagatgaatcggaaggg 323
           |||| ||||||||| || ||||| ||||||||||||||||||||||
Sbjct: 64  ggatggaagaggctcagaaggtgcttgaggagatgaatcggaaggg 109


>gnl|LJGI|FS328368 weakly similar to UniRef100_Q9FIX3 Cluster: Gb|AAD30619.1; n=1;
           Arabidopsis thaliana|Rep: Gb|AAD30619.1 - Arabidopsis
           thaliana, partial (7%)
          Length = 779

 Score = 54.0 bits (27), Expect = 1e-06
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 387 agataaggcttataaggttttgagtgaaatgattg 421
           ||||||||||||||||||||| | |||||||||||
Sbjct: 719 agataaggcttataaggttttcactgaaatgattg 753