Miyakogusa Predicted Gene

Lj0g3v0243849.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0243849.1 Non Chatacterized Hit- tr|F6HMY3|F6HMY3_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,83.93,7e-19,seg,NULL,CUFF.15949.1
         (327 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC68413 similar to UniRef100_A7Q813 Cluster: Chromosome...   335   1e-91
gnl|LJGI|GO012751 UniRef100_A7Q813 Cluster: Chromosome chr18 sca...   113   7e-25

>gnl|LJGI|TC68413 similar to UniRef100_A7Q813 Cluster: Chromosome chr18 scaffold_61,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr18 scaffold_61, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (77%)
          Length = 1415

 Score =  335 bits (169), Expect = 1e-91
 Identities = 169/169 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    atgcttccaggaacttgggcttatgttagtgctggtgcttttggaagagcaataattcaa 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904  atgcttccaggaacttgggcttatgttagtgctggtgcttttggaagagcaataattcaa 963

                                                                        
Query: 61   gaagagtctgaacttaaagtattaggaggaaacagtcagctgctgacacttgggctggga 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964  gaagagtctgaacttaaagtattaggaggaaacagtcagctgctgacacttgggctggga 1023

                                                             
Query: 121  ctgttggtcactgcattagctgctacatatgtcacacgacttgcgaagg 169
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 ctgttggtcactgcattagctgctacatatgtcacacgacttgcgaagg 1072


>gnl|LJGI|GO012751 UniRef100_A7Q813 Cluster: Chromosome chr18 scaffold_61, whole
          genome shotgun sequence; n=1; Vitis vinifera|Rep:
          Chromosome chr18 scaffold_61, whole genome shotgun
          sequence - Vitis vinifera (Grape), partial (7%)
          Length = 570

 Score =  113 bits (57), Expect = 7e-25
 Identities = 57/57 (100%)
 Strand = Plus / Plus

                                                                   
Query: 1  atgcttccaggaacttgggcttatgttagtgctggtgcttttggaagagcaataatt 57
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30 atgcttccaggaacttgggcttatgttagtgctggtgcttttggaagagcaataatt 86