Miyakogusa Predicted Gene

Lj0g3v0243579.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0243579.1 Non Chatacterized Hit- tr|F6HF07|F6HF07_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,82.98,3e-16,coiled-coil,NULL; TRANSCRIPTION INITIATION FACTOR IIE,
ALPHA SUBUNIT,NULL; no description,Winged hel,CUFF.15912.1
         (267 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC80033 weakly similar to UniRef100_A9S7R4 Cluster: Pre...   287   2e-77

>gnl|LJGI|TC80033 weakly similar to UniRef100_A9S7R4 Cluster: Predicted protein; n=1;
           Physcomitrella patens subsp. patens|Rep: Predicted
           protein - Physcomitrella patens subsp. patens, partial
           (25%)
          Length = 953

 Score =  287 bits (145), Expect = 2e-77
 Identities = 145/145 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgattgaaccttacaacaagttggttaaactagcagcaagggctttctatgatgatctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atgattgaaccttacaacaagttggttaaactagcagcaagggctttctatgatgatctt 187

                                                                       
Query: 61  accagcaaaggagataatcaaccaaaatcaggaagaagtgataacagaggaatagctgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 accagcaaaggagataatcaaccaaaatcaggaagaagtgataacagaggaatagctgtt 247

                                    
Query: 121 gtcgttcttgatgcactcacaagac 145
           |||||||||||||||||||||||||
Sbjct: 248 gtcgttcttgatgcactcacaagac 272