Miyakogusa Predicted Gene
- Lj0g3v0243119.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0243119.1 Non Chatacterized Hit- tr|K3Z5F8|K3Z5F8_SETIT
Uncharacterized protein OS=Setaria italica GN=Si021776,47.41,3e-19,K
homology RNA-binding domain,K Homology domain; KH_1,K Homology domain,
type 1; Eukaryotic type
KH-,NODE_46538_length_533_cov_164.864914.path1.1
(336 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC72222 similar to UniRef100_A7QUD9 Cluster: Chromosome... 666 0.0
gnl|LJGI|TC57429 similar to UniRef100_A7QUD9 Cluster: Chromosome... 131 3e-30
>gnl|LJGI|TC72222 similar to UniRef100_A7QUD9 Cluster: Chromosome chr11 scaffold_177,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_177, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (55%)
Length = 958
Score = 666 bits (336), Expect = 0.0
Identities = 336/336 (100%)
Strand = Plus / Plus
Query: 1 atggacgcggtgataaggatatttaaacgcgtctcgggattggctgaaattgaagcagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 atggacgcggtgataaggatatttaaacgcgtctcgggattggctgaaattgaagcagct 353
Query: 61 cctggggctacattttgttccgtccgtttattggtggcgtcgactcaggctatcaatttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cctggggctacattttgttccgtccgtttattggtggcgtcgactcaggctatcaatttg 413
Query: 121 attggaaagcagggctctttgattaaatccatacaggagagtaccggtgctgctgttaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 attggaaagcagggctctttgattaaatccatacaggagagtaccggtgctgctgttaga 473
Query: 181 gtattgactggagatgagcttccatcctatgctgctgctgatgagaggattgtggaagtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gtattgactggagatgagcttccatcctatgctgctgctgatgagaggattgtggaagtg 533
Query: 241 cagggggaacccttgaaggtccttaaagctctggaagcagtagttggacacttgaggaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 cagggggaacccttgaaggtccttaaagctctggaagcagtagttggacacttgaggaag 593
Query: 301 tttttggttgatcatactgttcttcccctatttgag 336
||||||||||||||||||||||||||||||||||||
Sbjct: 594 tttttggttgatcatactgttcttcccctatttgag 629
>gnl|LJGI|TC57429 similar to UniRef100_A7QUD9 Cluster: Chromosome chr11 scaffold_177,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_177, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (71%)
Length = 1840
Score = 131 bits (66), Expect = 3e-30
Identities = 219/270 (81%)
Strand = Plus / Plus
Query: 67 gctacattttgttccgtccgtttattggtggcgtcgactcaggctatcaatttgattgga 126
|||||||| ||||| ||||||||||| |||| | || ||||||||||||||||| |||
Sbjct: 547 gctacattctgttctatccgtttattgacggcggcaacacaggctatcaatttgatagga 606
Query: 127 aagcagggctctttgattaaatccatacaggagagtaccggtgctgctgttagagtattg 186
||||| || || |||| | ||||||| |||| |||||| ||| || ||| |||| ||
Sbjct: 607 aagcaaggttcaacaattagagccatacatgagaataccggcgcttctattaaagtactg 666
Query: 187 actggagatgagcttccatcctatgctgctgctgatgagaggattgtggaagtgcagggg 246
| ||||||||| | | ||| | |||| |||| ||||||||||| | ||| |||||||
Sbjct: 667 tcaggagatgaggtgcaatcttttgctactgcggatgagaggatcatagaattgcaggga 726
Query: 247 gaacccttgaaggtccttaaagctctggaagcagtagttggacacttgaggaagtttttg 306
||| |||||||||||||||| || |||||||| || ||||| || ||||||| ||||||
Sbjct: 727 gaagccttgaaggtccttaatgcgctggaagctgtggttggccatctgaggaaatttttg 786
Query: 307 gttgatcatactgttcttcccctatttgag 336
||||| || | |||||||||| ||||||||
Sbjct: 787 gttgaccacagtgttcttcccttatttgag 816