Miyakogusa Predicted Gene

Lj0g3v0242879.2

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0242879.2 tr|A9SSD6|A9SSD6_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_134439,39.31,0.000000000000005,seg,NULL; eIF-4B,Plant
specific eukaryotic initiation factor 4B; coiled-coil,NULL; SUBFAMILY
NOT NAM,CUFF.16077.2
         (954 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|DC594030 similar to UniRef100_Q9SQK7 Cluster: EIF4B; n=...  1068   0.0  
gnl|LJGI|TC71911 weakly similar to UniRef100_Q9M7E8 Cluster: Euk...   505   e-142

>gnl|LJGI|DC594030 similar to UniRef100_Q9SQK7 Cluster: EIF4B; n=1; Arabidopsis
           thaliana|Rep: EIF4B - Arabidopsis thaliana (Mouse-ear
           cress), partial (19%)
          Length = 588

 Score = 1068 bits (539), Expect = 0.0
 Identities = 548/550 (99%), Gaps = 1/550 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtctgggaagaagcctcttccgtctactgctcctcctcctgccagatcttctggttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40  atgtctgggaagaagcctcttccgtctactgctcctcctcctgccagatcttctggttat 99

                                                                       
Query: 61  tctggttttcgcgattctggtggcgaccccgatcggtggccgaggcgtgaaatggagcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 tctggttttcgcgattctggtggcgaccccgatcggtggccgaggcgtgaaatggagcct 159

                                                                       
Query: 121 gaccgtgagaggccaaggttggtgctggatccgcggaagggtgatggttctgtgaatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 gaccgtgagaggccaaggttggtgctggatccgcggaagggtgatggttctgtgaatgaa 219

                                                                       
Query: 181 actcctcccgcaatgacgaataagccgagtccgtttggtgctgctaggcctagggaggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 actcctcccgcaatgacgaataagccgagtccgtttggtgctgctaggcctagggaggag 279

                                                                       
Query: 241 gtgttggcgcagaagggattggattggaagaagctggattctgaaattgaggcgaagaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gtgttggcgcagaagggattggattggaagaagctggattctgaaattgaggcgaagaag 339

                                                                       
Query: 301 gctacaagtaggcccacgagttctcactccaccaccagcaggccttccagttctgagggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gctacaagtaggcccacgagttctcactccaccaccagcaggccttccagttctgagggt 399

                                                                       
Query: 361 ccagatgctgtgctgaaaccaaggccgaaggtgaacccctttggggaagccaaaccaagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ccagatgctgtgctgaaaccaaggccgaaggtgaacccctttggggaagccaaaccaagg 459

                                                                       
Query: 421 gaggttttgctcgccgagcgaggtgctgattggcgtaagattgatcttgaattggagcgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gaggttttgctcgccgagcgaggtgctgattggcgtaagattgatcttgaattggagcgt 519

                                                                       
Query: 481 cgcggggttgacaggcctgagacggaggaggaaaaattattaaaagaagaaattgataat 540
           ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 520 cgcggggttgacaggcctgagacggaggagg-aaaattattanaagaagaaattgataat 578

                     
Query: 541 ttgaagaagg 550
           ||||||||||
Sbjct: 579 ttgaagaagg 588


>gnl|LJGI|TC71911 weakly similar to UniRef100_Q9M7E8 Cluster: Eukaryotic initiation
           factor 4B; n=1; Arabidopsis thaliana|Rep: Eukaryotic
           initiation factor 4B - Arabidopsis thaliana (Mouse-ear
           cress), partial (14%)
          Length = 603

 Score =  505 bits (255), Expect = e-142
 Identities = 280/290 (96%), Gaps = 3/290 (1%)
 Strand = Plus / Plus

                                                                       
Query: 668 tccatgatttagatgacaaagttcgttttgggcagaaagctgttgataggccaggttcat 727
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tccatgatttagatgacaaagttcgttttgggcagaaagctgttgataggccaggttcat 60

                                                                       
Query: 728 cagcaggaaggactcctgttttatctgataggccgccatctcgctctggctcatttgagg 787
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cagcaggaaggactcctgttttatctgataggccgccatctcgctctggctcatttgagg 120

                                                                       
Query: 788 attccagaagtgtggatttttcagaccgccctcgatcccgcggcacaggagatgcttgga 847
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attccagaagtgtggatttttcagaccgccctcgatcccgcggcacaggagatgcttgga 180

                                                                       
Query: 848 tgcgtcctagtgacgaccgaagacagtttcaaggtagcagggaacgagggnnnnnnncag 907
           ||||||||||||||||||||||||||||||||||||||||||||||||||       |||
Sbjct: 181 tgcgtcctagtgacgaccgaagacagtttcaaggtagcagggaacgagggtttttttcag 240

                                                             
Query: 908 gcagcagagacatggat---aggtcaaggtcaagagaaagatggtgacga 954
           |||||||||||||||||   ||||||||||||||||||||||||||||||
Sbjct: 241 gcagcagagacatggatagcaggtcaaggtcaagagaaagatggtgacga 290