Miyakogusa Predicted Gene
- Lj0g3v0240409.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0240409.2 Non Chatacterized Hit- tr|I3SXG7|I3SXG7_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,97.91,0,no
description,Nucleotide-binding, alpha-beta plait; RRM_1,RNA
recognition motif domain; SMALL NUCLE,CUFF.15734.2
(756 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC60605 similar to UniRef100_Q8H0P8 Cluster: RNA-bindin... 1499 0.0
gnl|LJGI|AU088876 similar to UniRef100_Q8H0P8 Cluster: RNA-bindi... 504 e-142
gnl|LJGI|TC73260 similar to UniRef100_Q8H0P8 Cluster: RNA-bindin... 472 e-132
gnl|LJGI|AV769796 similar to UniRef100_Q8H0P8 Cluster: RNA-bindi... 107 1e-22
gnl|LJGI|AV410204 weakly similar to UniRef100_Q8H0P8 Cluster: RN... 70 2e-11
>gnl|LJGI|TC60605 similar to UniRef100_Q8H0P8 Cluster: RNA-binding protein; n=1;
Medicago truncatula|Rep: RNA-binding protein - Medicago
truncatula (Barrel medic), partial (76%)
Length = 1190
Score = 1499 bits (756), Expect = 0.0
Identities = 756/756 (100%)
Strand = Plus / Plus
Query: 1 atggcggatggctactggaaccgtcagcaggcgcatatgccccactcaggaatgctcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 atggcggatggctactggaaccgtcagcaggcgcatatgccccactcaggaatgctcaaa 178
Query: 61 cgaccccgttccgactacgatatgccagcttctggtttgtcttcgggtaatgatattaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 cgaccccgttccgactacgatatgccagcttctggtttgtcttcgggtaatgatattaat 238
Query: 121 aattatattgtgcgcgatgatgaccgtactggtccccgaatgctaagggacacaaaaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aattatattgtgcgcgatgatgaccgtactggtccccgaatgctaagggacacaaaaaca 298
Query: 181 attggatctgcttatgaccgctaccttcagagtgggcaactttctgcatatacttctggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 attggatctgcttatgaccgctaccttcagagtgggcaactttctgcatatacttctggg 358
Query: 241 gaagccagtacaatcggtggtcttggatatgcaaggggtcctggtggattaccaggacat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gaagccagtacaatcggtggtcttggatatgcaaggggtcctggtggattaccaggacat 418
Query: 301 tctctagctgatcatgctgccatggggcgtcatggaggtggtggtcctgatattgcacca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tctctagctgatcatgctgccatggggcgtcatggaggtggtggtcctgatattgcacca 478
Query: 361 aatggacgaggttttaattatggtggtcagccaccagtagattctgtttccaggcctgga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aatggacgaggttttaattatggtggtcagccaccagtagattctgtttccaggcctgga 538
Query: 421 catgagacagttcctctacctccagatgcttcaagtactttatatgttgaaggtctgcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 catgagacagttcctctacctccagatgcttcaagtactttatatgttgaaggtctgcct 598
Query: 481 tctgatagcaccaaaagagaagtggctcatattttccgcccttttgttggatatagagaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tctgatagcaccaaaagagaagtggctcatattttccgcccttttgttggatatagagaa 658
Query: 541 gtgagacttgtaactaaagaatccaaacatcgtggtggagatcctctgatcctttgtttc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gtgagacttgtaactaaagaatccaaacatcgtggtggagatcctctgatcctttgtttc 718
Query: 601 gtggactttgaaaatccagcttgtgccgcaactgctcttagtgccttgcaaggttataaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 gtggactttgaaaatccagcttgtgccgcaactgctcttagtgccttgcaaggttataaa 778
Query: 661 gttgatgaactcgatcctgagtctggtcacttgaggcttcagttttcccggtatcctggt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 gttgatgaactcgatcctgagtctggtcacttgaggcttcagttttcccggtatcctggt 838
Query: 721 cctagaagtgggcctggatttcgtggtaagaggtga 756
||||||||||||||||||||||||||||||||||||
Sbjct: 839 cctagaagtgggcctggatttcgtggtaagaggtga 874
>gnl|LJGI|AU088876 similar to UniRef100_Q8H0P8 Cluster: RNA-binding protein; n=1;
Medicago truncatula|Rep: RNA-binding protein - Medicago
truncatula (Barrel medic), partial (23%)
Length = 406
Score = 504 bits (254), Expect = e-142
Identities = 271/277 (97%), Gaps = 1/277 (0%)
Strand = Plus / Plus
Query: 1 atggcggatggctactggaaccgtcagcaggcgcatatgccccactcaggaatgctcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 atggcggatggctactggaaccgtcagcaggcgcatatgccccactcaggaatgctcaaa 141
Query: 61 cgaccccgttccgactacgatatgccagcttctggtttgtcttcgggtaatgatattaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 cgaccccgttccgactacgatatgccagcttctggtttgtcttcgggtaatgatattaat 201
Query: 121 aattatattgtgcgcgatgatgaccgtactggtccccgaatgctaagggacacaaaaaca 180
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 202 aattatattgtgcgcgatgatgaccgtactggtccccgaatgctaanggacncaaaaaca 261
Query: 181 attggatctgcttatgaccgctaccttcagagtgggcaactttctgcatatacttctggg 240
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 262 attggatctgcttatgaccgctaccttcanantgggcaactttctgcatatacttctggg 321
Query: 241 gaagccagtacaatcggtggtcttggatatgcaaggg 277
||| ||| |||||||||||||||||||||||||||||
Sbjct: 322 gaancca-tacaatcggtggtcttggatatgcaaggg 357
>gnl|LJGI|TC73260 similar to UniRef100_Q8H0P8 Cluster: RNA-binding protein; n=1;
Medicago truncatula|Rep: RNA-binding protein - Medicago
truncatula (Barrel medic), partial (62%)
Length = 1115
Score = 472 bits (238), Expect = e-132
Identities = 586/702 (83%)
Strand = Plus / Plus
Query: 55 ctcaaacgaccccgttccgactacgatatgccagcttctggtttgtcttcgggtaatgat 114
||||||||||| ||| | || ||||||||| || |||| ||| | |||| | ||||||
Sbjct: 177 ctcaaacgaccgcgtactgaatacgatatgtcaccttcgggtcttacttcagctaatgac 236
Query: 115 attaataattatattgtgcgcgatgatgaccgtactggtccccgaatgctaagggacaca 174
|| |||||| |||| || ||| ||||||||||||||| || | ||| |||||||
Sbjct: 237 atgcataattttatttcacgagataatgaccgtactggtcaccaggggataaaggacaca 296
Query: 175 aaaacaattggatctgcttatgaccgctaccttcagagtgggcaactttctgcatatact 234
||||| |||| |||||||||||||||||||||||||||| | ||| || ||| || |
Sbjct: 297 aaaactcttgggtctgcttatgaccgctaccttcagagtgcggggcttacttcatttaat 356
Query: 235 tctggggaagccagtacaatcggtggtcttggatatgcaaggggtcctggtggattacca 294
|||||||||||||| ||||| |||||| |||||| | ||||||| |||||| || |||
Sbjct: 357 tctggggaagccagcacaattggtggtgttggattgggaaggggtgttggtgggttgcca 416
Query: 295 ggacattctctagctgatcatgctgccatggggcgtcatggaggtggtggtcctgatatt 354
|| ||||| |||| ||||| ||| | |||||||| || || |||||||| | |||| ||
Sbjct: 417 ggccattcactaggtgatcctgcggtcatggggcatctgggtggtggtggccatgatctt 476
Query: 355 gcaccaaatggacgaggttttaattatggtggtcagccaccagtagattctgtttccagg 414
|||| ||||||||| | ||||| || |||||| |||||||||| | |||||||||
Sbjct: 477 gcacgaaatggacggaatgccaattacggcggtcagttaccagtagatgcagtttccagg 536
Query: 415 cctggacatgagacagttcctctacctccagatgcttcaagtactttatatgttgaaggt 474
||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 537 cctggacctgaaacagttcctctacctccagatgcttagagtactttatatgttgaaggt 596
Query: 475 ctgccttctgatagcaccaaaagagaagtggctcatattttccgcccttttgttggatat 534
|| || || || |||| ||||| |||||||| |||||||| ||||||||||||||||||
Sbjct: 597 cttccatcggactgcacaaaaagggaagtggcccatatttttcgcccttttgttggatat 656
Query: 535 agagaagtgagacttgtaactaaagaatccaaacatcgtggtggagatcctctgatcctt 594
||||||||||||||||| || ||||||||||||||||| |||||||||||| | ||||||
Sbjct: 657 agagaagtgagacttgtgaccaaagaatccaaacatcgaggtggagatcctttaatcctt 716
Query: 595 tgtttcgtggactttgaaaatccagcttgtgccgcaactgctcttagtgccttgcaaggt 654
||||| || || |||| ||||| |||||||| ||||||||| | |||||||| ||||||
Sbjct: 717 tgttttgtagattttgctaatccggcttgtgcagcaactgctttgagtgccttacaaggt 776
Query: 655 tataaagttgatgaactcgatcctgagtctggtcacttgaggcttcagttttcccggtat 714
|||||||||||||||||| |||||||||| |||||||| ||||||||||||| |||| |
Sbjct: 777 tataaagttgatgaactcagtcctgagtctagtcacttgcggcttcagttttctcggttt 836
Query: 715 cctggtcctagaagtgggcctggatttcgtggtaagaggtga 756
|| ||||| |||||||| ||||| |||||| |||||||||
Sbjct: 837 cccggtcccagaagtggagctggacctcgtggcaagaggtga 878
>gnl|LJGI|AV769796 similar to UniRef100_Q8H0P8 Cluster: RNA-binding protein; n=1;
Medicago truncatula|Rep: RNA-binding protein - Medicago
truncatula (Barrel medic), partial (12%)
Length = 582
Score = 107 bits (54), Expect = 1e-22
Identities = 93/106 (87%)
Strand = Plus / Minus
Query: 651 aggttataaagttgatgaactcgatcctgagtctggtcacttgaggcttcagttttcccg 710
|||||||||||||||||||||| |||||||||| |||||||| ||||||||||||| ||
Sbjct: 349 aggttataaagttgatgaactcagtcctgagtctagtcacttgcggcttcagttttctcg 290
Query: 711 gtatcctggtcctagaagtgggcctggatttcgtggtaagaggtga 756
|| ||| ||||| |||||||| ||||| |||||| |||||||||
Sbjct: 289 gtttcccggtcccagaagtggagctggacctcgtggcaagaggtga 244
>gnl|LJGI|AV410204 weakly similar to UniRef100_Q8H0P8 Cluster: RNA-binding protein;
n=1; Medicago truncatula|Rep: RNA-binding protein -
Medicago truncatula (Barrel medic), partial (26%)
Length = 333
Score = 69.9 bits (35), Expect = 2e-11
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 168 ggacacaaaaacaattggatctgcttatgaccgctaccttcagagtg 214
|||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 55 ggacacaaaaactcttgggtctgcttatgaccgctaccttcagagtg 101
Score = 65.9 bits (33), Expect = 3e-10
Identities = 102/125 (81%)
Strand = Plus / Plus
Query: 234 ttctggggaagccagtacaatcggtggtcttggatatgcaaggggtcctggtggattacc 293
||||||||||||||| ||||| |||||| |||||| | ||||||| |||||| || ||
Sbjct: 209 ttctggggaagccagcacaattggtggtgttggattgggaaggggtgttggtgggttgcc 268
Query: 294 aggacattctctagctgatcatgctgccatggggcgtcatggaggtggtggtcctgatat 353
||| ||||| |||| ||||| ||| | |||||||| || || |||||||| | |||| |
Sbjct: 269 aggccattcactaggtgatcctgcggtcatggggcatctgggtggtggtggccatgatct 328
Query: 354 tgcac 358
|||||
Sbjct: 329 tgcac 333