Miyakogusa Predicted Gene

Lj0g3v0240199.1
Show Alignment: 

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0240199.1 tr|Q7XX30|Q7XX30_ORYSJ OSJNBa0060B20.17 protein
OS=Oryza sativa subsp. japonica GN=OSJNBa0060B20.17 ,59.38,1.7,
,39150_g.1
         (232 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC64055 similar to UniRef100_A7Q3D7 Cluster: Chromosome...   452   e-127
gnl|LJGI|AV422441 similar to UniRef100_A7Q3D7 Cluster: Chromosom...    98   3e-20
gnl|LJGI|TC68913 similar to UniRef100_A7Q3D7 Cluster: Chromosome...    54   4e-07

>gnl|LJGI|TC64055 similar to UniRef100_A7Q3D7 Cluster: Chromosome chr13 scaffold_48,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr13 scaffold_48, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (47%)
          Length = 841

 Score =  452 bits (228), Expect = e-127
 Identities = 231/232 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgacatcatcatcaatagaaaagacagcatctgtctccaaatcctttacttctttaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 atgacatcatcatcaatagaaaagacagcatctgtctccaaatcctttacttctttaaac 612

                                                                       
Query: 61  ctattgttcaaactgtcttccatgttgatgtcaaattttaatttgacatgtcgcccatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ctattgttcaaactgtcttccatgttgatgtcaaattttaatttgacatgtcgcccatct 552

                                                                       
Query: 121 gttgactcagactctattgcatggtttagaaatttaataagaaaatcagaaggagggtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gttgactcagactctattgcatggtttagaaatttaataagaaaatcagaaggagggtca 492

                                                               
Query: 181 ggttcgctccacactatatgtactgattcaagtcgcggacatgatgaataat 232
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 491 ggttcgctccacactatatgtgctgattcaagtcgcggacatgatgaataat 440


>gnl|LJGI|AV422441 similar to UniRef100_A7Q3D7 Cluster: Chromosome chr13 scaffold_48,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr13 scaffold_48, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (12%)
          Length = 480

 Score = 97.6 bits (49), Expect = 3e-20
 Identities = 49/49 (100%)
 Strand = Plus / Minus

                                                            
Query: 184 tcgctccacactatatgtactgattcaagtcgcggacatgatgaataat 232
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tcgctccacactatatgtactgattcaagtcgcggacatgatgaataat 432


>gnl|LJGI|TC68913 similar to UniRef100_A7Q3D7 Cluster: Chromosome chr13 scaffold_48,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr13 scaffold_48, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (23%)
          Length = 755

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                       
Query: 148 agaaatttaataagaaaatcagaaggagggtcaggttcgctccacactatatgtactgat 207
           |||||||| | ||||  ||| |||||||| || || || |||||||| |||||||| |||
Sbjct: 737 agaaattttaaaagagcatctgaaggaggatcgggctcactccacacaatatgtaccgat 678

                                  
Query: 208 tcaagtcgcggacatgatgaata 230
           ||||| || || |||||||||||
Sbjct: 677 tcaagacgagggcatgatgaata 655