Miyakogusa Predicted Gene

Lj0g3v0239839.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0239839.1 Non Chatacterized Hit- tr|C5XY07|C5XY07_SORBI
Putative uncharacterized protein Sb04g007400 OS=Sorghu,42.76,3e-19,ABC
TRANSPORTER,NULL; ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A
(ABCA),ABC transporter A,
ABCA,NODE_40083_length_417_cov_39.980816.path3.1
         (456 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BW630248 similar to UniRef100_A7QI68 Cluster: Chromosom...   305   1e-82

>gnl|LJGI|BW630248 similar to UniRef100_A7QI68 Cluster: Chromosome chr17 scaffold_101,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr17 scaffold_101, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (14%)
          Length = 480

 Score =  305 bits (154), Expect = 1e-82
 Identities = 246/274 (89%), Gaps = 2/274 (0%)
 Strand = Plus / Plus

                                                                       
Query: 185 aaatttcactagcatt-tctattggcttgtctg-ttctcaaatgttaagacggctgcagt 242
           |||||||||| ||||| ||||||||| | || | ||||||||| ||||||| ||| ||||
Sbjct: 13  aaatttcactggcattntctattggcgtctccgcttctcaaatattaagacagctacagt 72

                                                                       
Query: 243 atttgcatatattggcgtgtttggaaccgggtcattgggcgcctctcttctccaattttt 302
           | |||| ||||| || ||||||||||| |||| ||| || | || |||| ||||||||||
Sbjct: 73  aattgcctatatgggtgtgtttggaactgggttattaggtggctttcttttccaattttt 132

                                                                       
Query: 303 tgttcaagagaaatcattttcaagagggtggatcattgttatggagttatatccagggtt 362
             |||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 gattcaagaggaatcgtttccaagagggtggatcattgttatggagttatatccagggtt 192

                                                                       
Query: 363 ttccttatttcgagggttatatgaattttctcaatcttctttcactggggatgctttggg 422
           |||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 193 ttccttatttcgtgggttatatgaattttcacaatcttccttcactggggatgctttggg 252

                                             
Query: 423 gactcatggtatgcggtggggagatttgagtgat 456
           ||||||||||||||||||||||||||||||||||
Sbjct: 253 gactcatggtatgcggtggggagatttgagtgat 286