Miyakogusa Predicted Gene
- Lj0g3v0238669.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0238669.1 Non Chatacterized Hit- tr|I1JDA2|I1JDA2_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,31.66,2e-18,RNA-binding domain, RBD,NULL; RRM,RNA recognition
motif domain; coiled-coil,NULL; seg,NULL; no descr,CUFF.15707.1
(1077 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC59012 similar to UniRef100_Q00M91 Cluster: Poly(A)-bi... 1037 0.0
gnl|LJGI|BW607266 similar to UniRef100_Q00M91 Cluster: Poly(A)-b... 948 0.0
gnl|LJGI|TC79374 similar to UniRef100_Q9AT32 Cluster: Poly(A)-bi... 733 0.0
gnl|LJGI|TC66409 similar to UniRef100_Q9M6E4 Cluster: Poly(A)-bi... 353 1e-96
gnl|LJGI|TC59135 similar to UniRef100_Q9M549 Cluster: Poly(A)-bi... 196 2e-49
gnl|LJGI|TC62412 similar to UniRef100_Q9M6E4 Cluster: Poly(A)-bi... 121 1e-26
gnl|LJGI|TC77811 similar to UniRef100_Q9M549 Cluster: Poly(A)-bi... 119 4e-26
gnl|LJGI|FS326828 similar to UniRef100_A7QRL0 Cluster: Chromosom... 60 3e-08
>gnl|LJGI|TC59012 similar to UniRef100_Q00M91 Cluster: Poly(A)-binding protein; n=1;
Glycine max|Rep: Poly(A)-binding protein - Glycine max
(Soybean), partial (24%)
Length = 846
Score = 1037 bits (523), Expect = 0.0
Identities = 523/523 (100%)
Strand = Plus / Plus
Query: 1 atggcgcaaattcacgagactgacgcggtggctcaggaggcgaatcagccgatgccgacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atggcgcaaattcacgagactgacgcggtggctcaggaggcgaatcagccgatgccgacg 383
Query: 61 tctttgtacgtcggagatcttgacactgagatcaacgattcgcagctttacgatctcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tctttgtacgtcggagatcttgacactgagatcaacgattcgcagctttacgatctcttc 443
Query: 121 aaccagatcggccaggttgtttccgttcgggtctgcagggacttggccactcagcaatcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaccagatcggccaggttgtttccgttcgggtctgcagggacttggccactcagcaatcg 503
Query: 181 cttggttatggctatgtcaatttcactaaccctaaggatgccgcgacggcgttggatgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cttggttatggctatgtcaatttcactaaccctaaggatgccgcgacggcgttggatgtg 563
Query: 241 ctgaatttcactccgctgaacggcaaaccgattaggataatgtactctcatcgtgaccct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctgaatttcactccgctgaacggcaaaccgattaggataatgtactctcatcgtgaccct 623
Query: 301 agtgttcggaagagtggtgctgctaatatttttgtgaagaatttggataagtcaattgat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agtgttcggaagagtggtgctgctaatatttttgtgaagaatttggataagtcaattgat 683
Query: 361 cataaagctctatatgatacctttttggttttcggaaatattctgacttgcaagatagct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cataaagctctatatgatacctttttggttttcggaaatattctgacttgcaagatagct 743
Query: 421 acggatggttctggccagtctaaaggctatggttttgtgcaatttgagaatgaagaatct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 acggatggttctggccagtctaaaggctatggttttgtgcaatttgagaatgaagaatct 803
Query: 481 gcacaaaatgctattgacaatttcaatggcaagctgattggtg 523
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gcacaaaatgctattgacaatttcaatggcaagctgattggtg 846
>gnl|LJGI|BW607266 similar to UniRef100_Q00M91 Cluster: Poly(A)-binding protein; n=1;
Glycine max|Rep: Poly(A)-binding protein - Glycine max
(Soybean), partial (26%)
Length = 539
Score = 948 bits (478), Expect = 0.0
Identities = 484/486 (99%)
Strand = Plus / Plus
Query: 220 gccgcgacggcgttggatgtgctgaatttcactccgctgaacggcaaaccgattaggata 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 54 gccgcgacggcgttggatgtgctgaatttcactccgctgaacggcaaaccgattacgata 113
Query: 280 atgtactctcatcgtgaccctagtgttcggaagagtggtgctgctaatatttttgtgaag 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 atgtactctcatcgtgaccctagtgttcggaagagtggtgctgctaatatttttgtgaag 173
Query: 340 aatttggataagtcaattgatcataaagctctatatgatacctttttggttttcggaaat 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 aatttggataagtcaattgatcataaagctctatatgatacctttttggttttcggaaat 233
Query: 400 attctgacttgcaagatagctacggatggttctggccagtctaaaggctatggttttgtg 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 attctgacttgcaagatagctacggatggttctggccagtctaaaggctatggttttgtg 293
Query: 460 caatttgagaatgaagaatctgcacaaaatgctattgacaatttcaatggcaagctgatt 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 caatttgagaatgaagaatctgcacaaaatgctattgacaatttcaatggcaagctgatt 353
Query: 520 ggtgataaggaggtctatgttagtcatttccaacgaaagcaggacagagagaatgctgct 579
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 354 ggtgataaggaggtctatgttagtcatttccaacgaaagcaggacagagaggatgctgct 413
Query: 580 ctcggtggcgggaagtttaataatgtctatgtgaaaaacctatctgaggcgatgacggat 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ctcggtggcgggaagtttaataatgtctatgtgaaaaacctatctgaggcgatgacggat 473
Query: 640 gatgacttgaagaaaatatttagtgaatatggaactattactagtgccgtagtgatgaga 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gatgacttgaagaaaatatttagtgaatatggaactattactagtgccgtagtgatgaga 533
Query: 700 gatgtt 705
||||||
Sbjct: 534 gatgtt 539
>gnl|LJGI|TC79374 similar to UniRef100_Q9AT32 Cluster: Poly(A)-binding protein; n=1;
Daucus carota|Rep: Poly(A)-binding protein - Daucus
carota (Carrot), partial (28%)
Length = 567
Score = 733 bits (370), Expect = 0.0
Identities = 370/370 (100%)
Strand = Plus / Plus
Query: 708 tgggaaatcgaaatgttttggttttgtcaattttgaaaatgcagatgaagctgctaaagc 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgggaaatcgaaatgttttggttttgtcaattttgaaaatgcagatgaagctgctaaagc 60
Query: 768 tgtggatgcacttaatggaaagaaatttgatgataaggagtggtatgtcggaaaagccaa 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtggatgcacttaatggaaagaaatttgatgataaggagtggtatgtcggaaaagccaa 120
Query: 828 gaaaaagtctgaaagggagcttgaactgaaagaacaacatgagcagagtatgcaggaaac 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaaaaagtctgaaagggagcttgaactgaaagaacaacatgagcagagtatgcaggaaac 180
Query: 888 agttgacaaatatcaaggcgcaaacttgtatctcaagaacttggatgacaatgttgatga 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agttgacaaatatcaaggcgcaaacttgtatctcaagaacttggatgacaatgttgatga 240
Query: 948 tgaaaaactcagggaactgttctctgagtttggtacaataacttcttgcaagattatgcg 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgaaaaactcagggaactgttctctgagtttggtacaataacttcttgcaagattatgcg 300
Query: 1008 agatccacatggagttagtagaggatctggatttgttgcattttcaactcctgaggaagc 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agatccacatggagttagtagaggatctggatttgttgcattttcaactcctgaggaagc 360
Query: 1068 aactcgagct 1077
||||||||||
Sbjct: 361 aactcgagct 370
>gnl|LJGI|TC66409 similar to UniRef100_Q9M6E4 Cluster: Poly(A)-binding protein; n=1;
Nicotiana tabacum|Rep: Poly(A)-binding protein -
Nicotiana tabacum (Common tobacco), partial (62%)
Length = 1119
Score = 353 bits (178), Expect = 1e-96
Identities = 178/178 (100%)
Strand = Plus / Plus
Query: 900 tcaaggcgcaaacttgtatctcaagaacttggatgacaatgttgatgatgaaaaactcag 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcaaggcgcaaacttgtatctcaagaacttggatgacaatgttgatgatgaaaaactcag 60
Query: 960 ggaactgttctctgagtttggtacaataacttcttgcaagattatgcgagatccacatgg 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggaactgttctctgagtttggtacaataacttcttgcaagattatgcgagatccacatgg 120
Query: 1020 agttagtagaggatctggatttgttgcattttcaactcctgaggaagcaactcgagct 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agttagtagaggatctggatttgttgcattttcaactcctgaggaagcaactcgagct 178
>gnl|LJGI|TC59135 similar to UniRef100_Q9M549 Cluster: Poly(A)-binding protein; n=1;
Cucumis sativus|Rep: Poly(A)-binding protein - Cucumis
sativus (Cucumber), partial (25%)
Length = 824
Score = 196 bits (99), Expect = 2e-49
Identities = 345/427 (80%)
Strand = Plus / Plus
Query: 92 tcaacgattcgcagctttacgatctcttcaaccagatcggccaggttgtttccgttcggg 151
|||||||||||||||| |||||||| ||||||||| | || || || ||||| ||| |||
Sbjct: 378 tcaacgattcgcagctctacgatctgttcaaccaggttggacaagtcgtttctgttaggg 437
Query: 152 tctgcagggacttggccactcagcaatcgcttggttatggctatgtcaatttcactaacc 211
| |||||||||||| |||||| | || || |||||||||||||| ||||||| ||||
Sbjct: 438 tttgcagggacttgaccactcgccgctcactcggttatggctatgtgaatttcagcaacc 497
Query: 212 ctaaggatgccgcgacggcgttggatgtgctgaatttcactccgctgaacggcaaaccga 271
|| ||||| || | ||| ||||||||||||||||||||||| |||||| || || |
Sbjct: 498 ctcctgatgctgcaagggcattggatgtgctgaatttcactccactgaacaacaggccta 557
Query: 272 ttaggataatgtactctcatcgtgaccctagtgttcggaagagtggtgctgctaatattt 331
||||| | ||||| || ||||| || |||||| | || ||||||||| ||||||||||||
Sbjct: 558 ttagggtcatgtattcccatcgggatcctagtatccgtaagagtggtactgctaatattt 617
Query: 332 ttgtgaagaatttggataagtcaattgatcataaagctctatatgatacctttttggttt 391
|| | ||||||||||| ||| |||||||||| ||||| || ||||||| |||| ||
Sbjct: 618 ttatcaagaatttggacaaggcaattgatcacaaagcgttacatgatactttttcttctt 677
Query: 392 tcggaaatattctgacttgcaagatagctacggatggttctggccagtctaaaggctatg 451
| |||| |||||| | |||||||| || || |||| || |||||||| ||||||||||
Sbjct: 678 ttggaagtattctttcctgcaagattgcaactgatgcctcgggccagtccaaaggctatg 737
Query: 452 gttttgtgcaatttgagaatgaagaatctgcacaaaatgctattgacaatttcaatggca 511
| ||||| || ||||| | ||| ||||||| || ||||| ||||| || || |||||||
Sbjct: 738 gctttgttcagtttgacactgagcaatctgcgcagaatgcgattgataagttgaatggca 797
Query: 512 agctgat 518
||||||
Sbjct: 798 tgctgat 804
>gnl|LJGI|TC62412 similar to UniRef100_Q9M6E4 Cluster: Poly(A)-binding protein; n=1;
Nicotiana tabacum|Rep: Poly(A)-binding protein -
Nicotiana tabacum (Common tobacco), partial (65%)
Length = 1191
Score = 121 bits (61), Expect = 1e-26
Identities = 104/117 (88%), Gaps = 1/117 (0%)
Strand = Plus / Plus
Query: 961 gaactgttctctgagtttggtacaataacttcttgcaagattatgcgagatccacatgga 1020
||||||||||||||||| |||||||||||||| | |||||| |||||||| ||| |||
Sbjct: 10 gaactgttctctgagtt-ggtacaataacttcattcaagatcatgcgagacccaaccgga 68
Query: 1021 gttagtagaggatctggatttgttgcattttcaactcctgaggaagcaactcgagct 1077
| ||||||||||| ||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 69 ataagtagaggatcgggatttgttgcattttcaactcctgaggaagcatcacgagct 125
>gnl|LJGI|TC77811 similar to UniRef100_Q9M549 Cluster: Poly(A)-binding protein; n=1;
Cucumis sativus|Rep: Poly(A)-binding protein - Cucumis
sativus (Cucumber), partial (97%)
Length = 2698
Score = 119 bits (60), Expect = 4e-26
Identities = 336/428 (78%)
Strand = Plus / Plus
Query: 637 gatgatgacttgaagaaaatatttagtgaatatggaactattactagtgccgtagtgatg 696
|||||||| |||||||| | ||| |||||| |||||| ||||| ||||| || || |||
Sbjct: 968 gatgatgaattgaagaatgtttttggtgaatttggaacaattaccagtgctgttgtaatg 1027
Query: 697 agagatgttgatgggaaatcgaaatgttttggttttgtcaattttgaaaatgcagatgaa 756
|| |||| ||||||||||| || || ||||| ||||| || ||||| ||||| |||||
Sbjct: 1028 agggatggggatgggaaatcaaagtgctttggatttgtgaactttgagaatgctgatgat 1087
Query: 757 gctgctaaagctgtggatgcacttaatggaaagaaatttgatgataaggagtggtatgtc 816
||||||| |||||| || | |||||||| || || ||||||| ||||| ||||||||
Sbjct: 1088 gctgctagagctgttgagtctcttaatgggaaaaaggttgatgacaaggaatggtatgtt 1147
Query: 817 ggaaaagccaagaaaaagtctgaaagggagcttgaactgaaagaacaacatgagcagagt 876
|||||||| | || || ||||||||||||| ||| ||||| | || |||||||||
Sbjct: 1148 ggaaaagctcaaaagaaatctgaaagggagcaagaattgaaaaataaatttgagcagagc 1207
Query: 877 atgcaggaaacagttgacaaatatcaaggcgcaaacttgtatctcaagaacttggatgac 936
||| | ||| | | || ||||| ||||| |||||||||||| |||| || || |||||
Sbjct: 1208 atgaaagaagctgcagataaataccaaggggcaaacttgtatgtcaaaaatttagatgat 1267
Query: 937 aatgttgatgatgaaaaactcagggaactgttctctgagtttggtacaataacttcttgc 996
| ||| |||||| ||||| | ||| |||||||| | |||||| || || ||||||
Sbjct: 1268 agcattgctgatgagaaacttaaggagctgttctcctcttatggtaccattacctcttgc 1327
Query: 997 aagattatgcgagatccacatggagttagtagaggatctggatttgttgcattttcaact 1056
||| ||||| |||| || |||| | ||| ||||||| || ||||||||||| ||||||
Sbjct: 1328 aaggttatgagagaccccaatggcataagtcgaggatcagggtttgttgcattctcaact 1387
Query: 1057 cctgagga 1064
|| |||||
Sbjct: 1388 cccgagga 1395
Score = 60.0 bits (30), Expect = 3e-08
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 430 tctggccagtctaaaggctatggttttgtgcaatttgagaatgaagaatctgcacaaaat 489
||||| || |||||||||||||| ||||| |||||||||| ||| ||| |||| ||||||
Sbjct: 764 tctggtcaatctaaaggctatggctttgtacaatttgagactgaggaagctgctcaaaat 823
Query: 490 gc 491
||
Sbjct: 824 gc 825
>gnl|LJGI|FS326828 similar to UniRef100_A7QRL0 Cluster: Chromosome undetermined
scaffold_151, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_151,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (24%)
Length = 748
Score = 60.0 bits (30), Expect = 3e-08
Identities = 75/90 (83%)
Strand = Plus / Plus
Query: 430 tctggccagtctaaaggctatggttttgtgcaatttgagaatgaagaatctgcacaaaat 489
||||| ||||| ||||| |||||||||||||| ||||| ||||| || |||| || |||
Sbjct: 653 tctggtcagtcgaaagggtatggttttgtgcagtttgacaatgatgaggctgcccagaat 712
Query: 490 gctattgacaatttcaatggcaagctgatt 519
|| ||| |||| || ||||||| |||||||
Sbjct: 713 gccattaacaagttgaatggcatgctgatt 742