Miyakogusa Predicted Gene

Lj0g3v0236199.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0236199.1 Non Chatacterized Hit- tr|C0JP24|C0JP24_LOTJA
Putative basic helix-loop-helix protein BHLH6
OS=Lotus,33.04,0.0001,ATHOOK,AT hook-like; seg,NULL,CUFF.15464.1
         (540 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP056463                                                     103   1e-21

>gnl|LJGI|BP056463 
          Length = 457

 Score =  103 bits (52), Expect = 1e-21
 Identities = 125/148 (84%), Gaps = 1/148 (0%)
 Strand = Plus / Minus

                                                                       
Query: 393 tccttctccatcgggcccttatttcacgcgagcaaagaagacttggtgtcttgcacaaat 452
           |||||| || ||||| ||||||||||| ||||| |||||| |||||||||||||  |  |
Sbjct: 310 tccttcaccttcgggtccttatttcac-cgagccaagaaggcttggtgtcttgctaagtt 252

                                                                       
Query: 453 ggtaggaatgtctttccctggcagcgatgaagatgccattcgagggttggccgcagttat 512
            | ||| |||||||||||| | || |||||||||| ||||| ||||||| |  |||||||
Sbjct: 251 tgcaggcatgtctttccctagtagtgatgaagatgtcattcaagggttgactacagttat 192

                                       
Query: 513 taaagagaattttccttatatgtgttag 540
           ||||||||||||||||| || |||||||
Sbjct: 191 taaagagaattttccttctaggtgttag 164