Miyakogusa Predicted Gene

Lj0g3v0233549.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0233549.1 Non Chatacterized Hit- tr|I1MZW6|I1MZW6_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,78.87,0,seg,NULL;
Aa_trans,Amino acid transporter, transmembrane; SUBFAMILY NOT
NAMED,NULL; AMINO ACID TRANS,CUFF.15260.1
         (1011 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP030795 similar to UniRef100_Q2HUS3 Cluster: Amino aci...    62   7e-09
gnl|LJGI|TC79943 similar to UniRef100_Q2HUT2 Cluster: Amino acid...    58   1e-07

>gnl|LJGI|BP030795 similar to UniRef100_Q2HUS3 Cluster: Amino acid/polyamine
           transporter II; n=1; Medicago truncatula|Rep: Amino
           acid/polyamine transporter II - Medicago truncatula
           (Barrel medic), partial (29%)
          Length = 492

 Score = 61.9 bits (31), Expect = 7e-09
 Identities = 73/87 (83%)
 Strand = Plus / Minus

                                                                       
Query: 805 tttggttacctcatgtcactggttggagcattactaagtgtcactgcttcaattttagtg 864
           ||||| || ||||||||||| ||||||||| | ||||||||||| ||||| ||| || | 
Sbjct: 304 tttgggtatctcatgtcactagttggagcacttctaagtgtcacagcttctattctactt 245

                                      
Query: 865 ccatcagtgtgctacttgaagatttca 891
           ||||   |||||||||| |||||||||
Sbjct: 244 ccatgcttgtgctacttaaagatttca 218


>gnl|LJGI|TC79943 similar to UniRef100_Q2HUT2 Cluster: Amino acid/polyamine transporter
            II; n=1; Medicago truncatula|Rep: Amino acid/polyamine
            transporter II - Medicago truncatula (Barrel medic),
            partial (96%)
          Length = 1881

 Score = 58.0 bits (29), Expect = 1e-07
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                         
Query: 631  atatacactaccttggtcaatcccataaccaaatatgcattgatg 675
            ||||| |||||||| ||||||||||||||||| ||||| ||||||
Sbjct: 1030 atatatactaccttagtcaatcccataaccaagtatgctttgatg 1074