Miyakogusa Predicted Gene
- Lj0g3v0232589.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0232589.1 tr|Q3E906|Q3E906_ARATH Cell division cycle 20,
cofactor of APC complex OS=Arabidopsis thaliana
GN=At,43.8,6e-19,WD_REPEATS_2,WD40 repeat;
WD_REPEATS_REGION,WD40-repeat-containing domain; WD40,WD40 repeat;
SUBFAMI,gene.g18219.t1.1
(819 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC59011 similar to UniRef100_A7PBM7 Cluster: Chromosome... 252 3e-66
gnl|LJGI|FS330543 similar to UniRef100_A7PBM7 Cluster: Chromosom... 248 5e-65
gnl|LJGI|TC80864 similar to UniRef100_A7PBM7 Cluster: Chromosome... 208 4e-53
>gnl|LJGI|TC59011 similar to UniRef100_A7PBM7 Cluster: Chromosome chr16 scaffold_10,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr16 scaffold_10, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (15%)
Length = 787
Score = 252 bits (127), Expect = 3e-66
Identities = 220/251 (87%)
Strand = Plus / Plus
Query: 262 ttggatgtaccaaatattagaaatgattactacgccaacatcatggattgggggaaaaac 321
||||||| |||||||||||||||||| ||||| | |||| ||||||||||||||||||
Sbjct: 389 ttggatgcaccaaatattagaaatgactactattcaaacactatggattgggggaaaaac 448
Query: 322 aatattctagctgttgctttgggctcagaaattttcctttggaactccttgaacagcaat 381
|| ||||| |||||||||||||| |||||||| | |||||||||||| |||||| ||||
Sbjct: 449 aacattcttgctgttgctttgggatcagaaatgtacctttggaactctgtgaacaacaat 508
Query: 382 gtacttcagttgtttgaaggcactgacgacgattgtcccaccagtgttgcgtggtctcag 441
|||| | ||||||||||| |||| || | ||||||||||| |||||||| ||||| | |
Sbjct: 509 gtacataggttgtttgaagccactcacaatgattgtcccacaagtgttgcctggtcacgg 568
Query: 442 gatgccaaacttctggcagcaggatttatgaactctgaacttcaactctgggatgctgag 501
|||||||||||| | ||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct: 569 gatgccaaacttttcgcagcaggatttatgcactctaagcttcaactctgggatgctgag 628
Query: 502 acttctaagcc 512
|||||||||||
Sbjct: 629 acttctaagcc 639
>gnl|LJGI|FS330543 similar to UniRef100_A7PBM7 Cluster: Chromosome chr16 scaffold_10,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr16 scaffold_10, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (12%)
Length = 825
Score = 248 bits (125), Expect = 5e-65
Identities = 324/393 (82%), Gaps = 18/393 (4%)
Strand = Plus / Plus
Query: 79 tacagacagaaactggatgagacactgaatttgggttcagatggcaagccatttaggatg 138
||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct: 433 tacagacagaaactggatgagacgctgaatttgggttctgatgggaagccatttaggatg 492
Query: 139 ttggttttcaggggatgtccaaaatcaactagaaagtctattcg------------gg-- 184
|| |||||||| ||| || | |||||||||| ||| |||||||| ||
Sbjct: 493 ttagttttcagaggaagttctaaatcaactacaaaatctattcgtcacatcgatcaggtg 552
Query: 185 ----aagcagaggcggcagcattgcaaaacagaagcaatcagccccactctcgtgcaatg 240
||||||| || || ||| | |||||||| | ||||||||||| | ||||| |||||
Sbjct: 553 cgacaagcagacgcagccgcacttcaaaacagtatcaatcagccccgccctcgtacaatg 612
Query: 241 cctaagaaagaaacaaagatattggatgtaccaaatattagaaatgattactacgccaac 300
||||||||||| | ||| | ||||||| |||||||||||||||||| ||||| | |||
Sbjct: 613 cctaagaaagaggccaaggtcttggatgcaccaaatattagaaatgactactattcaaac 672
Query: 301 atcatggattgggggaaaaacaatattctagctgttgctttgggctcagaaattttcctt 360
| |||||||||||||||||||| ||||| |||||||||||||| |||||||| | ||||
Sbjct: 673 actatggattgggggaaaaacaacattcttgctgttgctttgggatcagaaatgtacctt 732
Query: 361 tggaactccttgaacagcaatgtacttcagttgtttgaaggcactgacgacgattgtccc 420
|||||||| |||||| |||||||| | ||||||||||| |||| || | |||||||||
Sbjct: 733 tggaactctgtgaacaacaatgtacataggttgtttgaagccactcacaatgattgtccc 792
Query: 421 accagtgttgcgtggtctcaggatgccaaactt 453
|| |||||||| ||||| | |||||||||||||
Sbjct: 793 acaagtgttgcctggtcacgggatgccaaactt 825
>gnl|LJGI|TC80864 similar to UniRef100_A7PBM7 Cluster: Chromosome chr16 scaffold_10,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr16 scaffold_10, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (13%)
Length = 629
Score = 208 bits (105), Expect = 4e-53
Identities = 135/145 (93%)
Strand = Plus / Plus
Query: 675 gagcccggatgggttaacagtggtgtcagctggggcagatgaacgtcttcgcttttggga 734
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 gagcccagatgggttaacagtggtgtcagctggggcagatgaaactcttcgcttttggga 60
Query: 735 tatttttgggccacctgctactgatacttcaaagatctcatatctggataaccttttgtc 794
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 61 tatttttgggccacctgctactgatacatcaaagatctcacatctggataaccttttgtc 120
Query: 795 ttttaagatatcccaattaagataa 819
| ||||||||| ||||||||||
Sbjct: 121 cctgaagatatccgcattaagataa 145