Miyakogusa Predicted Gene
- Lj0g3v0231399.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0231399.1 tr|B6SUJ7|B6SUJ7_MAIZE Photosystem II core
complex proteins psbY OS=Zea mays PE=2
SV=1,56.03,1e-18,PsbY,Photosystem II PsbY; seg,NULL;
PSII_PsbY,Photosystem II PsbY,CUFF.15158.1
(615 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC67615 1219 0.0
gnl|LJGI|TC70490 854 0.0
gnl|LJGI|AV774475 similar to UniRef100_P80470 Cluster: Photosyst... 123 1e-27
>gnl|LJGI|TC67615
Length = 799
Score = 1219 bits (615), Expect = 0.0
Identities = 615/615 (100%)
Strand = Plus / Plus
Query: 1 atggcagcaaccatagcaacaatggccatgatcaactccaagtgcttcaccaccaagatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 atggcagcaaccatagcaacaatggccatgatcaactccaagtgcttcaccaccaagatg 138
Query: 61 atcaaccccaccaacaccaaactcacagcttcaaagcccaccaccctcttctcttttcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 atcaaccccaccaacaccaaactcacagcttcaaagcccaccaccctcttctcttttcag 198
Query: 121 aacctgccaaagggtctgtcctcagctgaaaacaccagcgtctccaccacttccatggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 aacctgccaaagggtctgtcctcagctgaaaacaccagcgtctccaccacttccatggct 258
Query: 181 ggcaccgccattgctggtgccattttctcgtcactcgtaagctgtgacgctgccttcgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ggcaccgccattgctggtgccattttctcgtcactcgtaagctgtgacgctgccttcgcc 318
Query: 241 gctcagcagattgctgaaatagcggaaggtgataaccgtggcctggctctgttgctgcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gctcagcagattgctgaaatagcggaaggtgataaccgtggcctggctctgttgctgcct 378
Query: 301 gtgattccagctattgcttgggtgctgttcaacattctgcagcctgcactgaaccaaatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtgattccagctattgcttgggtgctgttcaacattctgcagcctgcactgaaccaaatc 438
Query: 361 aaccgcatgcgtaacagcaacggggtgatcgttgggcttgggctcgggcttggtgggttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aaccgcatgcgtaacagcaacggggtgatcgttgggcttgggctcgggcttggtgggttg 498
Query: 421 gcagcgggctcggggatgttgtgggctccggaggcgtccgccggtgagttgggtatgatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gcagcgggctcggggatgttgtgggctccggaggcgtccgccggtgagttgggtatgatt 558
Query: 481 gctgatgccgccgcaggaggcagtgataacaggggacagcttctgctgtttgtggttgct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gctgatgccgccgcaggaggcagtgataacaggggacagcttctgctgtttgtggttgct 618
Query: 541 ccggctattggttgggtgctgtttaacatcttgcagccagctctcaaccagatcaacagg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ccggctattggttgggtgctgtttaacatcttgcagccagctctcaaccagatcaacagg 678
Query: 601 atgagatctgagtga 615
|||||||||||||||
Sbjct: 679 atgagatctgagtga 693
>gnl|LJGI|TC70490
Length = 981
Score = 854 bits (431), Expect = 0.0
Identities = 577/624 (92%), Gaps = 15/624 (2%)
Strand = Plus / Plus
Query: 1 atggcagcaaccatagcaacaa---tggccatgatcaactccaagtgcttcaccaccaag 57
|||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||
Sbjct: 83 atggcagcaaccatagcaacaacaatggccatgatcaactccaagtgcctcaacaccaag 142
Query: 58 ---atgatcaaccccaccaacaccaaactcacagcttcaaagcccaccaccctcttctct 114
|||||||||||||||||||||||||||||| ||||||| ||||||| | ||
Sbjct: 143 ttgatgatcaaccccaccaacaccaaactcacaacttcaaaacccacca------tttcc 196
Query: 115 tttcagaacctgccaaagggtctgtcctcagctgaaaacaccagcgtctccaccacttcc 174
||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 197 tttcaaaacctgccaaagggtctgtcctccgctgaaaacaccagcatctccaccacttcc 256
Query: 175 atggctggcaccgccattgctggtgccattttctcgtcactcgtaagctgtgacgctgcc 234
||||| |||||||||||||| || ||||||||||||||||| |||||||| |||||||||
Sbjct: 257 atggccggcaccgccattgccggggccattttctcgtcactagtaagctgcgacgctgcc 316
Query: 235 ttcgccgctcagcagattgctgaaatagcggaaggtgataaccgtggcctggctctgttg 294
|||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| ||
Sbjct: 317 ttcgccgctcagcagattgccgaaatagcagaaggcgataaccgtggcctggctctgctg 376
Query: 295 ctgcctgtgattccagctattgcttgggtgctgttcaacattctgcagcctgcactgaac 354
||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 377 ctgccattgattccagcaattgcttgggtgctgttcaacattctgcagccggcactgaac 436
Query: 355 caaatcaaccgcatgcgtaacagcaacggggtgatcgttgggcttgggctcgggcttggt 414
|| |||||| | |||||||||| ||| ||||| |||||||||||||||||||||||||||
Sbjct: 437 cagatcaacaggatgcgtaacaccaaaggggtcatcgttgggcttgggctcgggcttggt 496
Query: 415 gggttggcagcgggctcggggatgttgtgggctccggaggcgtccgccggtgagttgggt 474
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 497 gggttggcggcgggctcggggatgttgtgggctccggaggcgtctgccggtgagttgggt 556
Query: 475 atgattgctgat---gccgccgcaggaggcagtgataacaggggacagcttctgctgttt 531
|||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 557 atgattgctgatgccgccgccgccggaggcagtgataacagggggcagcttctgctgttt 616
Query: 532 gtggttgctccggctattggttgggtgctgtttaacatcttgcagccagctctcaaccag 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gtggttgctccggctattggttgggtgctgtttaacatcttgcagccagctctcaaccag 676
Query: 592 atcaacaggatgagatctgagtga 615
||||||||||||||||||||||||
Sbjct: 677 atcaacaggatgagatctgagtga 700
>gnl|LJGI|AV774475 similar to UniRef100_P80470 Cluster: Photosystem II core complex
proteins psbY, chloroplast precursor (L-
arginine-metabolizing enzyme) (L-AME) [Contains:
Photosystem II protein psbY-1 (psbY-A1); Photosystem II
protein psbY-2 (psbY-A2)]; n=1; Spinacia oleracea|Rep:
Photosystem II core complex proteins psbY, chloroplast
precursor (L- arginine-metabolizing enzyme) (L-AME)
[Contains: Photosystem II protein psbY-1 (psbY-A1);
Photosystem II protein psbY-2 (psbY-A2)] - Spinacia
oleracea (Spinach), partial (9%)
Length = 345
Score = 123 bits (62), Expect = 1e-27
Identities = 133/153 (86%), Gaps = 9/153 (5%)
Strand = Plus / Minus
Query: 418 ttggcagcgggctcggggatgttgtgggctccggaggcgtccgccggtgagttgggtatg 477
||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 345 ttggcggcgggctcggggatgttgtgggctccggaggcgtctgccggtgacttgggtatg 286
Query: 478 attgctg-atgccgccgc-----aggaggc--agtgat-aacaggggacagcttctgctg 528
||||||| |||||||| | | ||| ||||| ||| |||| | ||||||||||
Sbjct: 285 attgctgaatgccgccccccccgcgacggccacgtgatcaaccgggggccgcttctgctg 226
Query: 529 tttgtggttgctccggctattggttgggtgctg 561
|||||||||||||||||||||||||||||||||
Sbjct: 225 tttgtggttgctccggctattggttgggtgctg 193