Miyakogusa Predicted Gene

Lj0g3v0230749.3
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0230749.3 tr|D3BRB4|D3BRB4_POLPA RING zinc
finger-containing protein OS=Polysphondylium pallidum GN=vps11
PE=4,34.15,0.000000000005,seg,NULL; VACUOLAR MEMBRANE PROTEIN PEP5,
11,NULL; VACUOLAR MEMBRANE PROTEIN RELATED,NULL; no
descri,CUFF.15081.3
         (495 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC72284 similar to UniRef100_A7Q339 Cluster: Chromosome...   333   6e-91

>gnl|LJGI|TC72284 similar to UniRef100_A7Q339 Cluster: Chromosome chr12 scaffold_47,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr12 scaffold_47, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (21%)
          Length = 1237

 Score =  333 bits (168), Expect = 6e-91
 Identities = 238/259 (91%), Gaps = 8/259 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtatcagtggaggaagttcgagttctttgaggagaagtacgcttcgaaatgcgtgatt 60
           ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||
Sbjct: 104 atgtatcagtggaggaagttcgagttctttgaggacaagtacgctgcgaaatgcgtggtt 163

                                                                       
Query: 61  cccgaggatgatcatgatcatgatcatgatgt-cgatgtgaagaacgaggggaagaagat 119
           |||||||||||| |||||||||||  ||| |  ||| | ||||||      |||||||||
Sbjct: 164 cccgaggatgatgatgatcatgatg-tgaagaacgaggagaagaa------gaagaagat 216

                                                                       
Query: 120 cgattgctgttctagcggcaggggcaaggtggtgactggttttgatgacggcaccgtttg 179
           ||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 217 cgagtgctgttccagcggcaggggcaaggtggtgactggttttgatgacggtaccgtttg 276

                                                                       
Query: 180 cttgttcgatcgaggacttaagttcaattacgcttttcaacctcactcatcgtctgttct 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cttgttcgatcgaggacttaagttcaattacgcttttcaacctcactcatcgtctgttct 336

                              
Query: 240 ttttcttcagcagctcaag 258
            ||||||||||||||||||
Sbjct: 337 ctttcttcagcagctcaag 355