Miyakogusa Predicted Gene
- Lj0g3v0229789.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0229789.1 tr|A9RNM7|A9RNM7_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_117216,28.57,0.27,seg,NULL,CUFF.15019.1
(765 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58604 similar to UniRef100_P09694 Cluster: Uncharacte... 842 0.0
gnl|LJGI|TC59801 149 3e-35
gnl|LJGI|AU251720 UniRef100_Q8JL57 Cluster: ORF10; n=1; Choristo... 84 1e-15
gnl|LJGI|TC69674 similar to UniRef100_UPI00005DC2D4 Cluster: DNA... 78 9e-14
>gnl|LJGI|TC58604 similar to UniRef100_P09694 Cluster: Uncharacterized protein IRL4;
n=1; Human herpesvirus 5 strain AD169|Rep:
Uncharacterized protein IRL4 - Human cytomegalovirus
(strain AD169) (HHV-5) (Human herpesvirus 5), partial
(12%)
Length = 1221
Score = 842 bits (425), Expect = 0.0
Identities = 531/569 (93%), Gaps = 18/569 (3%)
Strand = Plus / Plus
Query: 1 atgaatgaatattggaatcaattttcctattctcctttttgctatgtttgggatcccatt 60
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 344 atgaatgaatattgcaatcaattttcctattctcccttttgctatgtttgggatcccatt 403
Query: 61 gaagaaatctatgtggtttctaacatggtatcagagctccaatggagctcaccgcctctt 120
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gaagaaatccatgtgatttctaacatggtatcagagctccaatggagctcaccgcctctt 463
Query: 121 ccgccgccgc------cgccgagttacgagcgcttcctccgacctgctcgacgtggcttc 174
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ccgccgccgctgccgtcgccgagttacgagcgcttcctccgacctgctcgacgtggcttc 523
Query: 175 aagcgctgccgccgcagcaccactgcgagaaccactgcgagattatcttccttcgatttc 234
|||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 524 aagcgctgccgccgcagcacca------------ctgcgagattatcttccttcaatttc 571
Query: 235 tctgatttgatcgctgatattggagacattgctgcagtttcatcttctccttcatcgttc 294
||||||||| || ||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 572 tctgatttggtcactgattttggagacattgctgtagtttcatcttctccttcatcgttc 631
Query: 295 cctgattcgatggtcatgggttctgattctctcatggtgcaagaatcattcgttaaggtt 354
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 632 tctgattcgatggtcatggcttctgattctctcatggtgcaagaatcattcgtgaaggtt 691
Query: 355 gaagatgatgattctgtcttgcatcctccagttcctctttcctctgtgtgctttgattct 414
|||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 692 gaagatgaggattctgtcttgcatgctccagttcctctttcctctgcgtgctttgattct 751
Query: 415 gccatagatgaaatgatttctgagaagattcttgatcatttgcctgtttctttcttcgcc 474
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 752 gccatagatgaaacgatttctgagaagattcttgatcattttcctgtttctttcttcgcc 811
Query: 475 gatcgagaaatcaagattccggcgtggaaaccggcgattgatccgttcgtttttggcact 534
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 812 gatcgagaaatcaagattccggcgtggaaaccggcgattgagccgttcgtttttggcact 871
Query: 535 ttcagcaagggttacttcgtttcttcttc 563
|||||||||||| |||||||||||||||
Sbjct: 872 atcagcaagggtttcttcgtttcttcttc 900
Score = 135 bits (68), Expect = 4e-31
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 675 tcgcgatgctactacaacttccaattctggttcttcgtccttctctgattcagcaatgga 734
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 922 tcgcgatgctactacaacttccaattatggttcttcgtccttctctgattcagccatggt 981
Query: 735 tgaagccgtgcctgagaaaattcttgaa 762
|||| | |||||||||||||||||||||
Sbjct: 982 tgaaactgtgcctgagaaaattcttgaa 1009
>gnl|LJGI|TC59801
Length = 1003
Score = 149 bits (75), Expect = 3e-35
Identities = 93/99 (93%), Gaps = 5/99 (5%)
Strand = Plus / Plus
Query: 449 atcatttgcctgtttctttcttcgccgatcgagaaatcaagattccggcgtggaaaccgg 508
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 31 atcattttcctgtttctttcttcgccgatcgagaa-----gattccggcgtggaaaccgg 85
Query: 509 cgattgatccgttcgtttttggcactttcagcaagggtt 547
|||||||||||||||||||||||||||||||||||||||
Sbjct: 86 cgattgatccgttcgtttttggcactttcagcaagggtt 124
>gnl|LJGI|AU251720 UniRef100_Q8JL57 Cluster: ORF10; n=1; Choristoneura fumiferana
granulovirus|Rep: ORF10 - Choristoneura fumiferana,
partial (3%)
Length = 374
Score = 83.8 bits (42), Expect = 1e-15
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 717 ctctgattcagcaatggatgaagccgtgcctgagaaaattcttgaa 762
|||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1 ctctgattcaacaatggatgaagccgtgcctgagaaaattcttgaa 46
>gnl|LJGI|TC69674 similar to UniRef100_UPI00005DC2D4 Cluster: DNA binding; n=1;
Arabidopsis thaliana|Rep: DNA binding - Arabidopsis
thaliana, partial (47%)
Length = 817
Score = 77.8 bits (39), Expect = 9e-14
Identities = 57/63 (90%)
Strand = Plus / Minus
Query: 619 tcgtcttgttcgtgttcgtcgttgagtagtttggtgagacgtttgcctctggtagttcgc 678
|||||||||||| ||||||||| ||| ||||||||||| |||||||||||||| | ||||
Sbjct: 136 tcgtcttgttcgagttcgtcgtcgaggagtttggtgaggcgtttgcctctggtggctcgc 77
Query: 679 gat 681
|||
Sbjct: 76 gat 74