Miyakogusa Predicted Gene

Lj0g3v0228699.1
Show Alignment:  
BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0228699.1 Non Chatacterized Hit- tr|G9FSH8|G9FSH8_ELAGV
Putative brevis radix protein (Fragment) OS=Elaeis
gui,71.01,1e-18,REGULATOR OF CHROMOSOME CONDENSATION-RELATED,NULL;
REGULATOR OF CHROMOSOME CONDENSATION,NULL; seg,NU,CUFF.14924.1
         (1008 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP052927 homologue to UniRef100_A7QR48 Cluster: Chromos...   264   1e-69
gnl|LJGI|TC75086 similar to UniRef100_A7PE06 Cluster: Chromosome...    78   1e-13

>gnl|LJGI|BP052927 homologue to UniRef100_A7QR48 Cluster: Chromosome chr2 scaffold_148,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr2 scaffold_148, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (12%)
          Length = 480

 Score =  264 bits (133), Expect = 1e-69
 Identities = 135/136 (99%)
 Strand = Plus / Minus

                                                                        
Query: 873  cacaatcaggcagttagctgatgggaccagggagctaagacgtgtcagattcagccggga 932
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480  cacaatcagncagttagctgatgggaccagggagctaagacgtgtcagattcagccggga 421

                                                                        
Query: 933  aagatttggggaggttaatgcaaaaacttggtgggaagagaacagagagagaatacaagc 992
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420  aagatttggggaggttaatgcaaaaacttggtgggaagagaacagagagagaatacaagc 361

                            
Query: 993  tcaatatctttgaagt 1008
            ||||||||||||||||
Sbjct: 360  tcaatatctttgaagt 345


>gnl|LJGI|TC75086 similar to UniRef100_A7PE06 Cluster: Chromosome chr11 scaffold_13,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr11 scaffold_13, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (34%)
          Length = 787

 Score = 77.8 bits (39), Expect = 1e-13
 Identities = 144/179 (80%)
 Strand = Plus / Plus

                                                                       
Query: 397 gaggagcccaaggagtggatggcacaggtagagccaggggttcacatcacctttacttct 456
           |||||||| ||||||||| |||| ||||| ||||| || |||   |||||||||  ||| 
Sbjct: 558 gaggagccgaaggagtgggtggcgcaggtggagcccggcgttttgatcacctttgtttcg 617

                                                                       
Query: 457 cttcctaatgggggcaatgatctcaagagaattcgattcagccgagagatgttcaataaa 516
           || ||   ||| || || ||||||||| | || || |||||||| |||||||| || |||
Sbjct: 618 ctcccgcgtggcggaaacgatctcaagcggatacgcttcagccgtgagatgtttaacaaa 677

                                                                      
Query: 517 tggcaagcacagagatggtggggtgagaattacgacagaatcatggaactttacaatgt 575
           |||||||| || ||||||||||  ||||| || ||||   |||||||||||||||||||
Sbjct: 678 tggcaagctcaaagatggtgggaagagaactatgacaaggtcatggaactttacaatgt 736