Miyakogusa Predicted Gene
- Lj0g3v0227659.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0227659.1 Non Chatacterized Hit- tr|A5B3Q6|A5B3Q6_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,26.28,7e-19,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
PPR_2,Pentatricopeptide repeat; PPR_1,Pentatricopep,CUFF.14841.1
(855 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS330439 weakly similar to UniRef100_A7PSR1 Cluster: Ch... 254 8e-67
gnl|LJGI|TC81373 similar to UniRef100_A7PSR1 Cluster: Chromosome... 210 1e-53
gnl|LJGI|TC82170 weakly similar to UniRef100_A7P9F5 Cluster: Chr... 170 9e-42
gnl|LJGI|TC63385 weakly similar to UniRef100_Q8L7T0 Cluster: AT4... 165 6e-40
gnl|LJGI|TC60576 similar to UniRef100_A7P9F5 Cluster: Chromosome... 157 1e-37
gnl|LJGI|BW594341 weakly similar to UniRef100_A7QH77 Cluster: Ch... 131 8e-30
gnl|LJGI|TC68987 similar to UniRef100_Q6ILL4 Cluster: HDC09080; ... 127 1e-28
gnl|LJGI|AV409767 weakly similar to UniRef100_Q0DEH2 Cluster: Os... 96 4e-19
gnl|LJGI|TC64546 weakly similar to UniRef100_A7P9F5 Cluster: Chr... 94 2e-18
gnl|LJGI|TC81578 weakly similar to UniRef100_Q9LVD3 Cluster: Sal... 78 1e-13
gnl|LJGI|TC62621 54 1e-06
>gnl|LJGI|FS330439 weakly similar to UniRef100_A7PSR1 Cluster: Chromosome chr8
scaffold_29, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr8 scaffold_29, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (5%)
Length = 742
Score = 254 bits (128), Expect = 8e-67
Identities = 185/204 (90%)
Strand = Plus / Plus
Query: 44 aaggtgaattcagtaaggcttttcatatgcatgatcaaatgatacacaagggttttttgc 103
|||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 514 aaggtgaattcagtaaggcttttcatatgcatcatcagatgatacacaagggtgttttgc 573
Query: 104 ctgattttgttactgagttttcaccgtctcttgttacgtgcaacgcgcttattcacgggc 163
||||||||||||||| |||||| ||| ||||| |||| | ||||||| ||||||||||||
Sbjct: 574 ctgattttgttactgggttttcgccggctctttttacatacaacgcgattattcacgggc 633
Query: 164 ttggcttcttcgggagggctgaggaggctctggagattttgaggggcatgcctgagatgg 223
|| |||| || ||||||| ||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 634 tttgctttttagggagggttgaggaggccctggggattttgaggggcatgcctgagatgg 693
Query: 224 gtttgttccctgatactgttagtt 247
|||||| |||||| |||||||||
Sbjct: 694 gtttgtcccctgacgctgttagtt 717
>gnl|LJGI|TC81373 similar to UniRef100_A7PSR1 Cluster: Chromosome chr8 scaffold_29,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_29, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (4%)
Length = 663
Score = 210 bits (106), Expect = 1e-53
Identities = 232/274 (84%)
Strand = Plus / Plus
Query: 52 ttcagtaaggcttttcatatgcatgatcaaatgatacacaagggttttttgcctgatttt 111
|||||||||||||||||| |||| ||| |||||| |||||||||||||||||||| ||||
Sbjct: 298 ttcagtaaggcttttcatttgcaagatgaaatgacacacaagggttttttgcctggtttt 357
Query: 112 gttactgagttttcaccgtctcttgttacgtgcaacgcgcttattcacgggcttggcttc 171
||||||| |||||| ||||||| |||||| | |||||| ||||| | || ||| ||||
Sbjct: 358 gttactgggttttcgccgtctcatgttacatacaacgccattatttatggcctttgctta 417
Query: 172 ttcgggagggctgaggaggctctggagattttgaggggcatgcctgagatgggtttgttc 231
|| || |||||||||||||||||| | |||||||||||||||||||||| || |||| |
Sbjct: 418 ttgggccgggctgaggaggctctgggggttttgaggggcatgcctgagatcgggttgtcc 477
Query: 232 cctgatactgttagttttaccgctgttgtatctgggtttttccgaatcggggagctgagg 291
|||||| ||||||||| | | ||||| ||| ||||||| ||||||| |||||| ||
Sbjct: 478 cctgatgctgttagttattgcactgttatattagggttttgccgaatccgggagccaggg 537
Query: 292 aaggcgtatgatttgaagctggagatggatgaaa 325
||||||||||| |||||| ||||| | |||||||
Sbjct: 538 aaggcgtatgagttgaaggtggaggtagatgaaa 571
>gnl|LJGI|TC82170 weakly similar to UniRef100_A7P9F5 Cluster: Chromosome chr3
scaffold_8, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr3 scaffold_8, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (17%)
Length = 832
Score = 170 bits (86), Expect = 9e-42
Identities = 182/214 (85%)
Strand = Plus / Plus
Query: 642 tgatactctgatagagaactgcagtaataatgaatttacgagtttggtagagcttgtcaa 701
|||| ||||||||||||||||||||||||||||||||| |||| |||||| |||||||||
Sbjct: 147 tgattctctgatagagaactgcagtaataatgaatttaagagtgtggtagggcttgtcaa 206
Query: 702 aggtttccggattagggatttagagaatgaagcagccagtgttttaaacacaatgcttca 761
||||||| | || |||| ||||| ||||||||| ||||| | | ||||||| || |
Sbjct: 207 aggtttcggaatgaggggtttagtgaatgaagccgccagagctcgtgtcacaatgtttga 266
Query: 762 ttggaatgataagccagatggagcagtttataatttcttaattgttgaacattgtagatg 821
||||| |||||||||||||||| ||||||||||| ||||| ||||||||| ||||||
Sbjct: 267 ggggaattataagccagatggagccgtttataatttattaatatttgaacattctagatg 326
Query: 822 tgataatggtgataaggcatatgatatgtacatg 855
| ||||| | ||||||| |||||||||||||||
Sbjct: 327 tcgtaatgttcataaggcgtatgatatgtacatg 360
>gnl|LJGI|TC63385 weakly similar to UniRef100_Q8L7T0 Cluster: AT4g28010/T13J8_120; n=1;
Arabidopsis thaliana|Rep: AT4g28010/T13J8_120 -
Arabidopsis thaliana (Mouse-ear cress), partial (6%)
Length = 1001
Score = 165 bits (83), Expect = 6e-40
Identities = 149/171 (87%)
Strand = Plus / Plus
Query: 45 aggtgaattcagtaaggcttttcatatgcatgatcaaatgatacacaagggttttttgcc 104
|||||||||||||| |||||||||| |||||||| |||||| ||||| ||||||||||||
Sbjct: 831 aggtgaattcagtatggcttttcatttgcatgatgaaatgagacacaggggttttttgcc 890
Query: 105 tgattttgttactgagttttcaccgtctcttgttacgtgcaacgcgcttattcacgggct 164
||||||||||| | |||||||||| ||||||||||| | |||||| |||||||| |||||
Sbjct: 891 tgattttgttattcagttttcaccatctcttgttacattcaacgcccttattcatgggct 950
Query: 165 tggcttcttcgggagggctgaggaggctctggagattttgaggggcatgcc 215
| ||| || | ||||| ||| |||||||||| |||||||| ||||||||
Sbjct: 951 ttgctctttggagagggttgacgaggctctgggtattttgagaggcatgcc 1001
>gnl|LJGI|TC60576 similar to UniRef100_A7P9F5 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (5%)
Length = 914
Score = 157 bits (79), Expect = 1e-37
Identities = 184/219 (84%)
Strand = Plus / Plus
Query: 635 taacatttgatactctgatagagaactgcagtaataatgaatttacgagtttggtagagc 694
|||||| |||||||||||||||||||||||||||||||||||| | |||| |||||| |
Sbjct: 27 taacatatgatactctgatagagaactgcagtaataatgaattcaagagtgtggtaggac 86
Query: 695 ttgtcaaaggtttccggattagggatttagagaatgaagcagccagtgttttaaacacaa 754
|||||||||||||| | |||| |||| |||||||||||||||| | | ||||||
Sbjct: 87 ttgtcaaaggtttcatcaagaggggtttacagaatgaagcagccagagctcatgacacaa 146
Query: 755 tgcttcattggaatgataagccagatggagcagtttataatttcttaattgttgaacatt 814
||||||| ||||| |||||||||||||||||||||||||||| ||||| || ||||
Sbjct: 147 tgcttcacgggaattataagccagatggagcagtttataatttgttaatatttagtcatt 206
Query: 815 gtagatgtgataatggtgataaggcatatgatatgtaca 853
|||| | ||||| ||||||||||||| |||||||||
Sbjct: 207 ctagaagccttaatgttgataaggcatataatatgtaca 245
>gnl|LJGI|BW594341 weakly similar to UniRef100_A7QH77 Cluster: Chromosome chr18
scaffold_96, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr18 scaffold_96, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (4%)
Length = 458
Score = 131 bits (66), Expect = 8e-30
Identities = 183/222 (82%)
Strand = Plus / Plus
Query: 104 ctgattttgttactgagttttcaccgtctcttgttacgtgcaacgcgcttattcacgggc 163
||||||||||| ||| ||||| || ||||||||||| | ||| || |||||||| ||
Sbjct: 26 ctgattttgtttctgccttttcgccatctcttgttacatacaatgcacttattcatggct 85
Query: 164 ttggcttcttcgggagggctgaggaggctctggagattttgaggggcatgcctgagatgg 223
| |||| |||||||| | ||||||| |||| ||||||||||||||||||| ||||||
Sbjct: 86 attgctttctcgggaggcttcaggaggcgctggggattttgaggggcatgcctcagatgg 145
Query: 224 gtttgttccctgatactgttagttttaccgctgttgtatctgggtttttccgaatcgggg 283
| |||| ||||||| |||||||| || ||||||| |||| | ||| | ||||||| |||
Sbjct: 146 gattgtcccctgatggtgttagttataacgctgttatatccgcgttatgccgaatccggg 205
Query: 284 agctgaggaaggcgtatgatttgaagctggagatggatgaaa 325
||||| ||||||| | |||||||||| | |||||||||||||
Sbjct: 206 agctggggaaggcctttgatttgaagtttgagatggatgaaa 247
>gnl|LJGI|TC68987 similar to UniRef100_Q6ILL4 Cluster: HDC09080; n=1; Drosophila
melanogaster|Rep: HDC09080 - Drosophila melanogaster
(Fruit fly), partial (10%)
Length = 813
Score = 127 bits (64), Expect = 1e-28
Identities = 175/212 (82%)
Strand = Plus / Plus
Query: 642 tgatactctgatagagaactgcagtaataatgaatttacgagtttggtagagcttgtcaa 701
||||| ||||||||||||||||||||||||||| |||| |||| |||||| |||| ||||
Sbjct: 13 tgatattctgatagagaactgcagtaataatgattttaggagtgtggtagggcttatcaa 72
Query: 702 aggtttccggattagggatttagagaatgaagcagccagtgttttaaacacaatgcttca 761
|||||||| | |||||||||| | ||||||||||||| | | ||||||||||| |
Sbjct: 73 aggtttcctcacgagggatttagtgtatgaagcagccagagctcatgacacaatgcttga 132
Query: 762 ttggaatgataagccagatggagcagtttataatttcttaattgttgaacattgtagatg 821
||||| |||||| ||| || |||||||||||| | ||||| ||| ||||||||||
Sbjct: 133 ggggaattataagctagagggggcagtttataatgtattaatatatgatcattgtagatc 192
Query: 822 tgataatggtgataaggcatatgatatgtaca 853
|| ||||| | |||||| |||||||||||||
Sbjct: 193 tggtaatgtttgtaaggcgtatgatatgtaca 224
>gnl|LJGI|AV409767 weakly similar to UniRef100_Q0DEH2 Cluster: Os06g0152500 protein;
n=1; Oryza sativa Japonica Group|Rep: Os06g0152500
protein - Oryza sativa subsp. japonica (Rice), partial
(6%)
Length = 411
Score = 95.6 bits (48), Expect = 4e-19
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 45 aggtgaattcagtaaggcttttcatatgcatgatcaaatgatacacaagggttttttgcc 104
||||||||||||||||| || | || |||||||||||||||||||||| ||| |||||||
Sbjct: 269 aggtgaattcagtaaggtttctaatttgcatgatcaaatgatacacaatggtgttttgcc 328
Query: 105 tgattttgttac 116
||||||||||||
Sbjct: 329 tgattttgttac 340
>gnl|LJGI|TC64546 weakly similar to UniRef100_A7P9F5 Cluster: Chromosome chr3
scaffold_8, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr3 scaffold_8, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (19%)
Length = 877
Score = 93.7 bits (47), Expect = 2e-18
Identities = 83/95 (87%)
Strand = Plus / Plus
Query: 177 gagggctgaggaggctctggagattttgaggggcatgcctgagatgggtttgttccctga 236
||||| |||||||||| ||| |||||||||||||||| |||||| |||||||| ||||||
Sbjct: 563 gagggttgaggaggctgtggggattttgaggggcatggctgagaggggtttgtcccctga 622
Query: 237 tactgttagttttaccgctgttgtatctgggtttt 271
| |||||||| |||| || || ||||||||||||
Sbjct: 623 tgttgttagttataccactattatatctgggtttt 657
>gnl|LJGI|TC81578 weakly similar to UniRef100_Q9LVD3 Cluster: Salt-inducible
protein-like; n=2; Arabidopsis thaliana|Rep:
Salt-inducible protein-like - Arabidopsis thaliana
(Mouse-ear cress), partial (5%)
Length = 669
Score = 77.8 bits (39), Expect = 1e-13
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 177 gagggctgaggaggctctggagattttgaggggcatgcctgagatgggtttgttccctga 236
||||| |||| ||||| ||| ||||||||||| |||| || ||| |||||||| ||||||
Sbjct: 458 gagggttgagaaggctgtggggattttgagggtcatggctaagaggggtttgtcccctga 517
Query: 237 tactgttagttttaccgctgttgtatctgggtttt 271
| ||||||||| |||| ||||| |||| |||||||
Sbjct: 518 tgctgttagttataccactgttatatccgggtttt 552
>gnl|LJGI|TC62621
Length = 736
Score = 54.0 bits (27), Expect = 1e-06
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 771 taagccagatggagcagtttataatttcttaattgttgaacattgtagatgtgataatgg 830
|||||||||||||||||| |||||||| ||||| |||| || |||||| | | ||||
Sbjct: 113 taagccagatggagcagtctataatttattaatatttgatcactgtagaagaggcaatgt 172
Query: 831 tgataaggcatatgatatgtaca 853
| ||||||| ||||| |||||||
Sbjct: 173 taataaggcgtatgaaatgtaca 195