Miyakogusa Predicted Gene

Lj0g3v0227509.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0227509.1 tr|F2DQ54|F2DQ54_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,34.27,7e-19,SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; seg,NULL; PORR,Plant organelle RNA
recognition doma,CUFF.14828.1
         (733 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC82125 similar to UniRef100_Q9ZPE8 Cluster: T3H13.12 p...   787   0.0  

>gnl|LJGI|TC82125 similar to UniRef100_Q9ZPE8 Cluster: T3H13.12 protein; n=1;
           Arabidopsis thaliana|Rep: T3H13.12 protein - Arabidopsis
           thaliana (Mouse-ear cress), partial (40%)
          Length = 548

 Score =  787 bits (397), Expect = 0.0
 Identities = 403/405 (99%)
 Strand = Plus / Plus

                                                                       
Query: 149 acagtccccgaaccaacccggtccaaccacaacccaaccgcatcgccgaactggaacgta 208
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 acagtccccgaaccaacccggtccaaccacaacccaaccgcatcgccgaactggaacgta 203

                                                                       
Query: 209 tcctcgaccgggacgcactcctccggttcgtcaccaaatcgaagcagttcctctcctccc 268
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tcctcgaccgggacgcactcctccggttcgtcaccaaatcgaagcagttcctctcctccc 263

                                                                       
Query: 269 agccggagcatgtcctccgcctcgacgacgctgggaagctccaccgcgagctcggcttcc 328
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 264 agccggagcatgtcctccgcctcgacgacgctgagaagctccaccgcgagctcggcttcc 323

                                                                       
Query: 329 ctcgcggccgcaaggtctcccgcttcatccaggaccacccgctcctcttccagacctacc 388
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctcgcggccgcaaggtctcccgcttcatccaggaccacccgctcctcttccagacctacc 383

                                                                       
Query: 389 gccactccgacggcaaaatgtggctcgggttcaccgacctcatggaagatctcctcgccg 448
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gccactccgacggcaaaatgtggctcgggttcaccgacctcatggaagatctcctcgccg 443

                                                                       
Query: 449 aggagcaatgcatcatggactccatggagaaggatcgcgttgacaaggttcggaggttgc 508
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aggagcaatgcatcatggactccatggagaaggatcgcgttgacaaggttcggaggttgc 503

                                                        
Query: 509 tgatgatgtctgcgcgtaaccgaattgctctgagtaagattcacc 553
           ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 504 tgatgatgtctgcgcgtaaccgaattgctttgagtaagattcacc 548



 Score =  198 bits (100), Expect = 3e-50
 Identities = 100/100 (100%)
 Strand = Plus / Plus

                                                                       
Query: 8   ggcgcttcttctccatcttcaaatcctccaaaaccctatcccctaagaaccctaatccca 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3   ggcgcttcttctccatcttcaaatcctccaaaaccctatcccctaagaaccctaatccca 62

                                                   
Query: 68  atttcttcactgccccattttccacctccttcttagtcac 107
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  atttcttcactgccccattttccacctccttcttagtcac 102