Miyakogusa Predicted Gene

Lj0g3v0226959.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0226959.1 Non Chatacterized Hit- tr|I3T881|I3T881_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4
SV=1,97.44,3e-26,seg,NULL,CUFF.14787.1
         (331 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC79558 similar to UniRef100_Q5CXR5 Cluster: Splicing f...   620   e-177
gnl|LJGI|TC69892                                                      170   3e-42
gnl|LJGI|TC73697                                                      123   7e-28
gnl|LJGI|DC597698 similar to UniRef100_A0GTN6 Cluster: Single-st...    84   6e-16

>gnl|LJGI|TC79558 similar to UniRef100_Q5CXR5 Cluster: Splicing factor with 3 RRM
           domains; n=1; Cryptosporidium parvum Iowa II|Rep:
           Splicing factor with 3 RRM domains - Cryptosporidium
           parvum Iowa II, partial (3%)
          Length = 1015

 Score =  620 bits (313), Expect = e-177
 Identities = 319/321 (99%)
 Strand = Plus / Minus

                                                                       
Query: 11  tcccaattccctccaccaaatccccaaatccacgatcagaaagagatgaaggaggaataa 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tcccaattccctccaccaaatccccaaatccacgatcagaaagagatgaaggaggaataa 459

                                                                       
Query: 71  caactccaaactccaataccagaatgaatcgagattcttccttgccactgcttgttccac 130
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 458 caactccaaactccaataccaaaatgaatcgagattcttccttgccactgcttgttccac 399

                                                                       
Query: 131 caccgtcaccgccgatcttcaaccgcgtcgttacggtagggatgtcgcgcctctgccgga 190
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 caccgtcaccgccaatcttcaaccgcgtcgttacggtagggatgtcgcgcctctgccgga 339

                                                                       
Query: 191 ggcatcattgtggtcgtgggtcttctcaccctcgatctcccttcctccatcgcagtcttc 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ggcatcattgtggtcgtgggtcttctcaccctcgatctcccttcctccatcgcagtcttc 279

                                                                       
Query: 251 ttccttcgcgatctgctctacctctgccacaagttctggatccatcccttcgtcatctct 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ttccttcgcgatctgctctacctctgccacaagttctggatccatcccttcgtcatctct 219

                                
Query: 311 gcttcatctcctttctctaat 331
           |||||||||||||||||||||
Sbjct: 218 gcttcatctcctttctctaat 198


>gnl|LJGI|TC69892 
          Length = 579

 Score =  170 bits (86), Expect = 3e-42
 Identities = 139/157 (88%), Gaps = 6/157 (3%)
 Strand = Plus / Plus

                                                                       
Query: 163 acggtagggatgtcgcgcctctgccggaggcatcattgtggtcgtgggtcttctcaccct 222
           |||| |||||||||||||||| ||||||| | ||| ||||| ||||||||||||||||||
Sbjct: 317 acggcagggatgtcgcgcctccgccggagccgtcactgtggccgtgggtcttctcaccct 376

                                                                       
Query: 223 cgatctcccttcctccatcgcagtcttcttccttcgcgatctgctctacctctgccacaa 282
           |||||||||||||||||||||| |||||||||||||||||||        |||||||| |
Sbjct: 377 cgatctcccttcctccatcgcaatcttcttccttcgcgatct------tgtctgccacga 430

                                                
Query: 283 gttctggatccatcccttcgtcatctctgcttcatct 319
           ||||||||||||||||| ||||| |||||||||||||
Sbjct: 431 gttctggatccatccctccgtcacctctgcttcatct 467


>gnl|LJGI|TC73697 
          Length = 486

 Score =  123 bits (62), Expect = 7e-28
 Identities = 116/134 (86%)
 Strand = Plus / Minus

                                                                       
Query: 50  aaagagatgaaggaggaataacaactccaaactccaataccagaatgaatcgagattctt 109
           ||||||||||||||||||||||| ||||||||||||||||||||  |||||| |||||||
Sbjct: 136 aaagagatgaaggaggaataacatctccaaactccaataccagacggaatcgggattctt 77

                                                                       
Query: 110 ccttgccactgcttgttccaccaccgtcaccgccgatcttcaaccgcgtcgttacggtag 169
           |||| || | ||| |||||||| || ||||| |||| |||| |||||| ||  |||| ||
Sbjct: 76  ccttaccgcggctggttccaccgccatcaccaccgagcttcgaccgcgccgccacggcag 17

                         
Query: 170 ggatgtcgcgcctc 183
           || |||||||||||
Sbjct: 16  gggtgtcgcgcctc 3


>gnl|LJGI|DC597698 similar to UniRef100_A0GTN6 Cluster: Single-stranded DNA-binding
           protein; n=1; Burkholderia phytofirmans PsJN|Rep:
           Single-stranded DNA-binding protein - Burkholderia
           phytofirmans PsJN, partial (12%)
          Length = 575

 Score = 83.8 bits (42), Expect = 6e-16
 Identities = 60/66 (90%)
 Strand = Plus / Plus

                                                                       
Query: 259 cgatctgctctacctctgccacaagttctggatccatcccttcgtcatctctgcttcatc 318
           ||||||||||| |||||||||| | |||||||||||||||| ||||| || |||||||||
Sbjct: 337 cgatctgctctgcctctgccacgatttctggatccatccctccgtcacctatgcttcatc 396

                 
Query: 319 tccttt 324
           ||||||
Sbjct: 397 tccttt 402