Miyakogusa Predicted Gene

Lj0g3v0226889.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0226889.1 tr|E4MXT7|E4MXT7_THEHA mRNA, clone: RTFL01-29-J08
OS=Thellungiella halophila PE=2
SV=1,49.12,0.00009,seg,NULL,CUFF.14783.1
         (318 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC81420 similar to UniRef100_Q7XAF0 Cluster: Tocopherol...   301   1e-81

>gnl|LJGI|TC81420 similar to UniRef100_Q7XAF0 Cluster: Tocopherol cyclase; n=1;
           Eucalyptus gunnii|Rep: Tocopherol cyclase - Eucalyptus
           gunnii (Cider tree), partial (32%)
          Length = 764

 Score =  301 bits (152), Expect = 1e-81
 Identities = 201/223 (90%), Gaps = 3/223 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggaaaccaccaagctctggaactctccacactttcctttctccaccaccgccaatgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  atggaaaccaccaagctctggaactctccacactttcctttctccaccaccgccaatgcc 133

                                                                       
Query: 61  aatgccaatgccagacccacacaccgcgtttctctcaaacttccatttccatcaannnnn 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 134 aatgccaatgccagacccacacaccgcgtttctctcaaacttccatttccatcaa---ca 190

                                                                       
Query: 121 nnnnnnnnnnnnnnnnnttcccgcctccacgtagctcccattgcgtactcgccaacacca 180
                            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ccaccaccaccaccaccttcccgcctccacgtagctcccattgcgtactcgccaacacca 250

                                                      
Query: 181 cccaatcgagaccttcgaacccctcatagcgggtaccattttg 223
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 cccaatcgagaccttcgaacccctcatagcgggtaccattttg 293



 Score =  178 bits (90), Expect = 1e-44
 Identities = 93/94 (98%)
 Strand = Plus / Plus

                                                                       
Query: 225 ggaggcagagtttctgcttcatgtattcggtggagaatcctgcgtttcccaacccattga 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ggaggcagagtttctgcttcatgtattcggtggagaatcctgcgtttcccaacccattga 410

                                             
Query: 285 cgcctttggaatcggttcaatatggacctaggtt 318
           ||||||||||||| ||||||||||||||||||||
Sbjct: 411 cgcctttggaatcagttcaatatggacctaggtt 444