Miyakogusa Predicted Gene
- Lj0g3v0225609.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0225609.1 Non Chatacterized Hit- tr|I3SB42|I3SB42_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.5,0,POLY-A
BINDING PROTEIN 2,NULL; RNA-binding domain, RBD,NULL;
coiled-coil,NULL; RRM,RNA recognition m,CUFF.14671.1
(606 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC57394 similar to UniRef100_A1YMZ8 Cluster: Poly(A)-bi... 1201 0.0
gnl|LJGI|TC65571 similar to UniRef100_A9U298 Cluster: Predicted ... 1178 0.0
gnl|LJGI|FS334315 similar to UniRef100_A1YMZ8 Cluster: Poly(A)-b... 890 0.0
gnl|LJGI|TC65696 similar to UniRef100_A1YMZ8 Cluster: Poly(A)-bi... 141 6e-33
gnl|LJGI|TC58753 similar to UniRef100_A7PBI0 Cluster: Chromosome... 80 2e-14
>gnl|LJGI|TC57394 similar to UniRef100_A1YMZ8 Cluster: Poly(A)-binding protein
II-like; n=1; Brassica rapa|Rep: Poly(A)-binding protein
II-like - Brassica campestris (Field mustard), partial
(75%)
Length = 1085
Score = 1201 bits (606), Expect = 0.0
Identities = 606/606 (100%)
Strand = Plus / Plus
Query: 1 atggaaaacgacgacgtcgatatggtcggagctgaaaacaacaacaacaacgaagctgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 atggaaaacgacgacgtcgatatggtcggagctgaaaacaacaacaacaacgaagctgaa 103
Query: 61 ttggatgacatgaagaaacgcttgaaggaaatggaagatgaagctgcagctttgcgggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 ttggatgacatgaagaaacgcttgaaggaaatggaagatgaagctgcagctttgcgggag 163
Query: 121 atgcaggccaaggttgagaaggagatgggatctgtgccagatcctgccaatgcttctgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 atgcaggccaaggttgagaaggagatgggatctgtgccagatcctgccaatgcttctgca 223
Query: 181 agtcagaccaatagagaggaagtggattctcgatcagtctttgttggcaatgtggattat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 agtcagaccaatagagaggaagtggattctcgatcagtctttgttggcaatgtggattat 283
Query: 241 tcatgcactcctgaagaagtgcagcagcatttccaatcatgtggaactgtaaaccgagtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tcatgcactcctgaagaagtgcagcagcatttccaatcatgtggaactgtaaaccgagtc 343
Query: 301 accattcgcactgataagtttggccagcctaagggttatgcctatgtagaatttcttgaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 accattcgcactgataagtttggccagcctaagggttatgcctatgtagaatttcttgaa 403
Query: 361 gtagaggctgtccaagaggctctcgcgctgaatgagtctgaactacatgggcgtcaattg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gtagaggctgtccaagaggctctcgcgctgaatgagtctgaactacatgggcgtcaattg 463
Query: 421 aaggtaagtggtaagaggaccaacgtaccagggatgaagcaatttcgtccccgcgcccct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 aaggtaagtggtaagaggaccaacgtaccagggatgaagcaatttcgtccccgcgcccct 523
Query: 481 aacccttacatgggttttcgaggcagagccctatttgcaccacctccttttgcctttgct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 aacccttacatgggttttcgaggcagagccctatttgcaccacctccttttgcctttgct 583
Query: 541 ccttatggatatggaaaggttccaagattcagaatggggatgcgctacagcccctactat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ccttatggatatggaaaggttccaagattcagaatggggatgcgctacagcccctactat 643
Query: 601 tgagtt 606
||||||
Sbjct: 644 tgagtt 649
>gnl|LJGI|TC65571 similar to UniRef100_A9U298 Cluster: Predicted protein; n=1;
Physcomitrella patens subsp. patens|Rep: Predicted
protein - Physcomitrella patens subsp. patens, partial
(71%)
Length = 754
Score = 1178 bits (594), Expect = 0.0
Identities = 604/606 (99%), Gaps = 1/606 (0%)
Strand = Plus / Plus
Query: 1 atggaaaacgacgacgtcgatatggtcggagctgaaaacaacaacaacaacgaagctgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 atggaaaacgacgacgtcgatatggtcggagctgaaaacaacaacaacaacgaagctgaa 157
Query: 61 ttggatgacatgaagaaacgcttgaaggaaatggaagatgaagctgcagctttgcgggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 ttggatgacatgaagaaacgcttgaaggaaatggaagatgaagctgcagctttgcgggag 217
Query: 121 atgcaggccaaggttgagaaggagatgggatctgtgccagatcctgccaatgcttctgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 atgcaggccaaggttgagaaggagatgggatctgtgccagatcctgccaatgcttctgca 277
Query: 181 agtcagaccaatagagaggaagtggattctcgatcagtctttgttggcaatgtggattat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 agtcagaccaatagagaggaagtggattctcgatcagtctttgttggcaatgtggattat 337
Query: 241 tcatgcactcctgaagaagtgcagcagcatttccaatcatgtggaactgtaaaccgagtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tcatgcactcctgaagaagtgcagcagcatttccaatcatgtggaactgtaaaccgagtc 397
Query: 301 accattcgcactgataagtttggccagcctaagggttatgcctatgtagaatttcttgaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 accattcgcactgataagtttggccagcctaagggttatgcctatgtagaatttcttgaa 457
Query: 361 gtagaggctgtccaagaggctctcgcgctgaatgagtctgaactacatgggcgtcaattg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gtagaggctgtccaagaggctctcgcgctgaatgagtctgaactacatgggcgtcaattg 517
Query: 421 aaggtaagtggtaagaggaccaacgtaccagggatgaagcaatttcgtccccgcgcccct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 aaggtaagtggtaagaggaccaacgtaccagggatgaagcaatttcgtccccgcgcccct 577
Query: 481 aacccttacatgggttttcgaggcagagccctatttgcaccacctccttttgcctttgct 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 578 aacccttacatgggttttcgaggcaaagccctatttgcaccacctccttttgcctttgct 637
Query: 541 ccttatggatatggaaaggttccaagattcagaatggggatgcgctacagcccctactat 600
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 638 ccttatggatatggaaaggttccaagattcagaatggggatgcgctacag-ccctactat 696
Query: 601 tgagtt 606
||||||
Sbjct: 697 tgagtt 702
>gnl|LJGI|FS334315 similar to UniRef100_A1YMZ8 Cluster: Poly(A)-binding protein
II-like; n=1; Brassica rapa|Rep: Poly(A)-binding protein
II-like - Brassica campestris (Field mustard), partial
(67%)
Length = 809
Score = 890 bits (449), Expect = 0.0
Identities = 449/449 (100%)
Strand = Plus / Plus
Query: 158 cagatcctgccaatgcttctgcaagtcagaccaatagagaggaagtggattctcgatcag 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cagatcctgccaatgcttctgcaagtcagaccaatagagaggaagtggattctcgatcag 318
Query: 218 tctttgttggcaatgtggattattcatgcactcctgaagaagtgcagcagcatttccaat 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tctttgttggcaatgtggattattcatgcactcctgaagaagtgcagcagcatttccaat 378
Query: 278 catgtggaactgtaaaccgagtcaccattcgcactgataagtttggccagcctaagggtt 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 catgtggaactgtaaaccgagtcaccattcgcactgataagtttggccagcctaagggtt 438
Query: 338 atgcctatgtagaatttcttgaagtagaggctgtccaagaggctctcgcgctgaatgagt 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atgcctatgtagaatttcttgaagtagaggctgtccaagaggctctcgcgctgaatgagt 498
Query: 398 ctgaactacatgggcgtcaattgaaggtaagtggtaagaggaccaacgtaccagggatga 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctgaactacatgggcgtcaattgaaggtaagtggtaagaggaccaacgtaccagggatga 558
Query: 458 agcaatttcgtccccgcgcccctaacccttacatgggttttcgaggcagagccctatttg 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 agcaatttcgtccccgcgcccctaacccttacatgggttttcgaggcagagccctatttg 618
Query: 518 caccacctccttttgcctttgctccttatggatatggaaaggttccaagattcagaatgg 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 caccacctccttttgcctttgctccttatggatatggaaaggttccaagattcagaatgg 678
Query: 578 ggatgcgctacagcccctactattgagtt 606
|||||||||||||||||||||||||||||
Sbjct: 679 ggatgcgctacagcccctactattgagtt 707
Score = 321 bits (162), Expect = 3e-87
Identities = 162/162 (100%)
Strand = Plus / Plus
Query: 1 atggaaaacgacgacgtcgatatggtcggagctgaaaacaacaacaacaacgaagctgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 atggaaaacgacgacgtcgatatggtcggagctgaaaacaacaacaacaacgaagctgaa 131
Query: 61 ttggatgacatgaagaaacgcttgaaggaaatggaagatgaagctgcagctttgcgggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ttggatgacatgaagaaacgcttgaaggaaatggaagatgaagctgcagctttgcgggag 191
Query: 121 atgcaggccaaggttgagaaggagatgggatctgtgccagat 162
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 atgcaggccaaggttgagaaggagatgggatctgtgccagat 233
>gnl|LJGI|TC65696 similar to UniRef100_A1YMZ8 Cluster: Poly(A)-binding protein
II-like; n=1; Brassica rapa|Rep: Poly(A)-binding protein
II-like - Brassica campestris (Field mustard), partial
(83%)
Length = 1050
Score = 141 bits (71), Expect = 6e-33
Identities = 206/251 (82%)
Strand = Plus / Plus
Query: 220 tttgttggcaatgtggattattcatgcactcctgaagaagtgcagcagcatttccaatca 279
|||||||||||||| |||||| ||||||| ||||||||||||||||| || || ||||||
Sbjct: 418 tttgttggcaatgttgattatgcatgcacacctgaagaagtgcagcaacactttcaatca 477
Query: 280 tgtggaactgtaaaccgagtcaccattcgcactgataagtttggccagcctaagggttat 339
||||| || || ||| | ||||| || | || || ||||||||||||||||| |||| |
Sbjct: 478 tgtggtacagttaacagggtcactatcctgacagacaagtttggccagcctaaaggtttt 537
Query: 340 gcctatgtagaatttcttgaagtagaggctgtccaagaggctctcgcgctgaatgagtct 399
|| ||||| |||||| | |||| || ||||| |||||||||||| | ||||||| |||
Sbjct: 538 gcttatgtggaatttgtggaagctgaagctgttcaagaggctctccggttgaatgaatct 597
Query: 400 gaactacatgggcgtcaattgaaggtaagtggtaagaggaccaacgtaccagggatgaag 459
||||| ||||| |||||| ||||||| |||||||||||| || || || ||||||
Sbjct: 598 gaactgcatggccgtcaactgaaggttctgcctaagaggaccaatgttcctggaatgaag 657
Query: 460 caatttcgtcc 470
|||| ||||||
Sbjct: 658 caatatcgtcc 668
Score = 56.0 bits (28), Expect = 3e-07
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 79 cgcttgaaggaaatggaagatgaagctgcagctttgcgggagatgcaggccaaggttgag 138
|||||||||||||||||||| ||||| || ||| | || |||||||| || || || |||
Sbjct: 277 cgcttgaaggaaatggaagaagaagccgccgctcttcgtgagatgcaagctaaagtcgag 336
Query: 139 aaggagat 146
||||||||
Sbjct: 337 aaggagat 344
>gnl|LJGI|TC58753 similar to UniRef100_A7PBI0 Cluster: Chromosome chr16 scaffold_10,
whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr16 scaffold_10, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (79%)
Length = 1070
Score = 79.8 bits (40), Expect = 2e-14
Identities = 88/104 (84%)
Strand = Plus / Plus
Query: 196 gaggaagtggattctcgatcagtctttgttggcaatgtggattattcatgcactcctgaa 255
|||||||||||| ||||||| ||| |||||||||||| || ||| |||| || || |||
Sbjct: 313 gaggaagtggatggtcgatcaatctatgttggcaatgttgactatgcatgtacaccagaa 372
Query: 256 gaagtgcagcagcatttccaatcatgtggaactgtaaaccgagt 299
||||| || |||||||| || |||||||||||||| ||| ||||
Sbjct: 373 gaagtccaacagcattttcagtcatgtggaactgtgaacagagt 416