Miyakogusa Predicted Gene
- Lj0g3v0224259.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0224259.1 Non Chatacterized Hit- tr|I1ND38|I1ND38_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,39.16,1e-18,seg,NULL;
PPR: pentatricopeptide repeat domain,Pentatricopeptide repeat;
PPR_2,Pentatricopeptide rep,CUFF.14586.1
(456 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC81578 weakly similar to UniRef100_Q9LVD3 Cluster: Sal... 105 2e-22
gnl|LJGI|TC64546 weakly similar to UniRef100_A7P9F5 Cluster: Chr... 100 1e-20
gnl|LJGI|FS338098 weakly similar to UniRef100_A7Q333 Cluster: Ch... 94 9e-19
gnl|LJGI|BW605216 similar to UniRef100_A7Q333 Cluster: Chromosom... 84 9e-16
gnl|LJGI|AV774845 weakly similar to UniRef100_Q9LRY2 Cluster: Ar... 52 3e-06
>gnl|LJGI|TC81578 weakly similar to UniRef100_Q9LVD3 Cluster: Salt-inducible
protein-like; n=2; Arabidopsis thaliana|Rep:
Salt-inducible protein-like - Arabidopsis thaliana
(Mouse-ear cress), partial (5%)
Length = 669
Score = 105 bits (53), Expect = 2e-22
Identities = 222/276 (80%), Gaps = 3/276 (1%)
Strand = Plus / Plus
Query: 151 atgactgagaagggtgtggagccaaattcggattcgttgaatgaggttattcaaggtttg 210
|||||||| ||||||||||||||||||| || ||||| |||| ||||||||| || |||
Sbjct: 171 atgactgacaagggtgtggagccaaatttggtttcgtccaatgcggttattcaggggttg 230
Query: 211 tgccgggaatggaggacaaaagaagctgaggaggtgtttgaggagatgaaacggaagggt 270
||| ||| ||| | |||| |||||||||||| ||||||||||||| |||||||||
Sbjct: 231 tgcgaagaagaacggatagaagaggctgaggaggtggttgaggagatgaatcggaagggt 290
Query: 271 tttgcacctgatgagaagacttacacgtctctcattgatttgttatgcgactacgacgat 330
|| | ||||||||||| ||||||| |||||| || | || | |||||| || |
Sbjct: 291 ttgacccctgatgagaacacttacatgtctctgtttcagctgctctgcgac--cggtgcg 348
Query: 331 aagactgataaagctgataaggttttgcgtgaaatgattgatagaggattttcaccctca 390
||| | ||||| ||| ||||||||||| |||||||||||| |||||| || ||||| ||
Sbjct: 349 aag-cagataaggcttataaggttttgagtgaaatgattgttagaggtttgtcaccatct 407
Query: 391 gttgttgaatacaacaagcttattcgtgcatattgc 426
|| ||| ||||||||||||| || |||||| ||||
Sbjct: 408 gtcgttatatacaacaagcttgttagtgcatgttgc 443
>gnl|LJGI|TC64546 weakly similar to UniRef100_A7P9F5 Cluster: Chromosome chr3
scaffold_8, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr3 scaffold_8, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (19%)
Length = 877
Score = 99.6 bits (50), Expect = 1e-20
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 248 ttgaggagatgaaacggaagggttttgcacctgatgagaagacttacacgtctctcattg 307
||||||||||||| ||||||||||| || |||||||||| |||||||||||||||||||
Sbjct: 373 ttgaggagatgaatcggaagggtttggcccctgatgagaggacttacacgtctctcattc 432
Query: 308 atttgttatgcgac 321
||||||| ||||||
Sbjct: 433 atttgttctgcgac 446
Score = 91.7 bits (46), Expect = 4e-18
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 2 tgctccgtaacgtcgtgtcgccgccgaacgttaactcttacaacgtcgtgatccgaggct 61
||||||| |||| |||||||||||||||||| ||| ||||||||||| ||||||| ||||
Sbjct: 157 tgctccgaaacggcgtgtcgccgccgaacgtaaacgcttacaacgtcatgatccgcggct 216
Query: 62 tcgccgccgc 71
||||||||||
Sbjct: 217 tcgccgccgc 226
>gnl|LJGI|FS338098 weakly similar to UniRef100_A7Q333 Cluster: Chromosome chr12
scaffold_47, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr12 scaffold_47, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (3%)
Length = 792
Score = 93.7 bits (47), Expect = 9e-19
Identities = 86/99 (86%)
Strand = Plus / Plus
Query: 216 ggaatggaggacaaaagaagctgaggaggtgtttgaggagatgaaacggaagggttttgc 275
|||| |||||| || ||| ||||| |||||| || |||||||||| ||||||||||| ||
Sbjct: 232 ggaagggaggataacagaggctgaagaggtgcttcaggagatgaatcggaagggtttggc 291
Query: 276 acctgatgagaagacttacacgtctctcattgatttgtt 314
|||||||||| |||||||||||||||||| |||||||
Sbjct: 292 ccctgatgagactacttacacgtctctcattcatttgtt 330
Score = 56.0 bits (28), Expect = 2e-07
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 347 ataaggttttgcgtgaaatgattgatagaggattttcaccctcagttgttgaatacaaca 406
||||| ||||| || ||||||||| ||| || ||||||||||| |||| | |||||||
Sbjct: 672 ataagcttttgagtcaaatgattgctagtggcttttcaccctcggttgctatatacaacc 731
Query: 407 agcttattcgtgcatattgc 426
| ||| ||||||||||||||
Sbjct: 732 accttgttcgtgcatattgc 751
>gnl|LJGI|BW605216 similar to UniRef100_A7Q333 Cluster: Chromosome chr12 scaffold_47,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_47, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (3%)
Length = 482
Score = 83.8 bits (42), Expect = 9e-16
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 229 aaagaagctgaggaggtgtttgaggagatgaaacggaagggttttgcacctgatgagaag 288
||||| ||||||| | || |||||||||||| ||||||||||| || |||||||||| |
Sbjct: 265 aaagaggctgaggcgatgcttgaggagatgagtcggaagggtttggctcctgatgagagg 324
Query: 289 acttacacgtctctcatt 306
||||||||||||||||||
Sbjct: 325 acttacacgtctctcatt 342
>gnl|LJGI|AV774845 weakly similar to UniRef100_Q9LRY2 Cluster: Arabidopsis thaliana
genomic DNA, chromosome 3, TAC clone:K7P8; n=1;
Arabidopsis thaliana|Rep: Arabidopsis thaliana genomic
DNA, chromosome 3, TAC clone:K7P8 - Arabidopsis thaliana
(Mouse-ear cress), partial (4%)
Length = 268
Score = 52.0 bits (26), Expect = 3e-06
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 53 tccgaggcttcgccgccgctgggagcttagaaccagaatcgtggcccaacacgatgat 110
|||| ||||||||||||||||||| | ||||| ||| |||| ||||| |||||||||
Sbjct: 124 tccgcggcttcgccgccgctgggaacatagaatcagtatcggagcccatcacgatgat 67